diff README.rst @ 8:2c0bab71a436 draft

planemo upload commit 5e13878e9679f3f5ba8e482b9108249a43f3355e-dirty

--- a/README.rst	Fri Mar 23 10:28:16 2018 -0400
+++ b/README.rst	Tue Dec 18 09:48:29 2018 -0500
@@ -1,4 +1,4 @@
-Wrapper for Get expression data by tissue Tool
+Wrapper for Get expression profiles by tissue Tool
 =================================================
 
 **Authors**
@@ -13,11 +13,9 @@
 
 -------------------------------------------------
 
-This tool retrieve information from Human Protein Atlas (https://www.proteinatlas.org/) 
-regarding the expression profiles of human genes both on the mRNA and protein level. 
+This tool retrieve information from Human Protein Atlas (https://www.proteinatlas.org/) regarding the expression profiles of human genes both on the mRNA and protein level. 
 
-A list of ENSG (Ensembl gene) IDs must be entered (either via a copy/paste or by choosing a file), 
-if it's not the case, please use the ID_Convert tool from ProteoRE.
+A list of ENSG (Ensembl gene) IDs must be entered (either via a copy/paste or by choosing a file), if it's not the case, please use the ID_Convert tool from ProteoRE.
 
 The resources from Human Protein Atlas that can be queried are the following: 
 
@@ -31,25 +29,4 @@
 
   The tab-separated file includes Ensembl gene identifier ("Gene"), gene name ("Gene name"), tumor name ("Cancer"), the number of patients annotated for different staining levels ("High", "Medium", "Low" & "Not detected") and log-rank p values for patient survival and mRNA correlation ("prognostic - favourable", "unprognostic - favourable", "prognostic - unfavourable", "unprognostic - unfavourable").
 
-  The data is based on The Human Protein Atlas version 18 and Ensembl version 88.38.
-
------
-
-**Reliability score**
-
-Reliability score is divided into Enhanced, Supported, Approved, or Uncertain with respect 
-to the definitions from HPA:
-
-Enhanced - One or several antibodies with non-overlapping epitopes targeting the same gene 
-have obtained enhanced validation based on orthogonal or independent antibody validation method.
-
-Supported - Consistency with RNA-seq and/or protein/gene characterization data, 
-in combination with similar staining pattern if independent antibodies are available.
-
-Approved - Consistency with RNA-seq data in combination with inconsistency with, or lack of, 
-protein/gene characterization data. Alternatively, consistency with protein/gene characterization data 
-in combination with inconsistency with RNA-seq data. If independent antibodies are available, 
-the staining pattern is partly similar or dissimilar.
-
-Uncertain - Inconsistency with, or lack of, RNA-seq and/or protein/gene characterization data, 
-in combination with dissimilar staining pattern if independent antibodies are available.
+  The data is based on The Human Protein Atlas version 18 and Ensembl version 88.38.
\ No newline at end of file