Mercurial > repos > proteore > proteore_expression_levels_by_tissue
changeset 1:fd65af8bf64f draft
planemo upload commit 5774fd6a5a746f36f6bf4671a51a39ea2b978300-dirty
| author | proteore |
|---|---|
| date | Fri, 16 Feb 2018 04:39:51 -0500 |
| parents | 5501e74891e4 |
| children | bb0fd55b9d40 |
| files | sel_ann_hpa.xml test-data/proteinatlas.loc tool-data/proteinatlas.loc.sample |
| diffstat | 3 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/sel_ann_hpa.xml Fri Feb 16 04:22:54 2018 -0500 +++ b/sel_ann_hpa.xml Fri Feb 16 04:39:51 2018 -0500 @@ -178,7 +178,7 @@ </conditional> <conditional name="options"> <param name="database" value="normal"/> - <param name="proteinatlas" value="/Users/LinCun/Documents/ProteoRE/GitHub/ProteoRE/tools/select_annotate_tissue/test-data/normal_tissue.tsv"/> + <param name="proteinatlas" value="normal_tissue.tsv"/> <param name="normal_tissue" value="bronchus,lung,nasopharynx,salivary gland"/> <param name="level" value="Not detected,Medium,High,Low"/> <param name="reliability" value="Approved,Supported,Uncertain"/>
--- a/test-data/proteinatlas.loc Fri Feb 16 04:22:54 2018 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,5 +0,0 @@ -#This file lists the locations and dbkeys of Human Protein Atlas files. -#<name> <display_name (value)> <file_path> -full Full Human Protein Atlas /db/proteinatlas/current/proteinatlas.tsv -normal_tissue HPA Normal Tissue /db/proteinatlas/current/normal_tissue.tsv -pathology HPA Tumor Tissue /db/proteinatlas/current/pathology.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/proteinatlas.loc.sample Fri Feb 16 04:39:51 2018 -0500 @@ -0,0 +1,5 @@ +#This file lists the locations and dbkeys of Human Protein Atlas files. +#<name> <display_name (value)> <file_path> +#full Full Human Protein Atlas /db/proteinatlas/current/proteinatlas.tsv +#normal_tissue HPA Normal Tissue /db/proteinatlas/current/normal_tissue.tsv +#pathology HPA Tumor Tissue /db/proteinatlas/current/pathology.tsv