Mercurial > repos > proteore > proteore_expression_levels_by_tissue

changeset 13:2173192d4824 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 59b014e9f6e2d668cbd7c4844b10db3d59baefd8"
author proteore
date Thu, 07 May 2020 10:01:54 -0400
parents 56c93d1fc8fd
children
files get_expression_profiles.xml
diffstat 1 files changed, 7 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/get_expression_profiles.xml	Fri Jun 28 05:10:08 2019 -0400
+++ b/get_expression_profiles.xml	Thu May 07 10:01:54 2020 -0400
@@ -1,6 +1,7 @@
-<tool id="sel_ann_hpa" name="Get expression profiles" version="2019.06.27">
+<tool id="sel_ann_hpa" name="Get expression profiles" version="2020.05.07">
     <description>by (normal or tumor) tissue/cell type [Human Protein Atlas]
     </description>
+        <requirement type="package" version="3.6.1">r-base</requirement>
     <requirements>
     </requirements>
     <stdio>
@@ -68,7 +69,7 @@
                 <option value="tumor">Human Tumor Tissue</option>
             </param>
             <when value="normal">
-                <param name="proteinatlas" type="select" label="Normal tissue HPA version 18.1" >
+                <param name="proteinatlas" type="select" label="Normal tissue HPA version" >
                     <options from_data_table="proteore_protein_atlas_normal_tissue">
                         <filter type="sort_by" column="0"/>
                     </options>
@@ -137,7 +138,7 @@
                 </param>
             </when>
             <when value="tumor">
-                <param name="proteinatlas" type="select" label="Tumor tissue HPA version 18.1" >
+                <param name="proteinatlas" type="select" label="Tumor tissue HPA version" >
                     <options from_data_table="proteore_protein_atlas_tumor_tissue">
                         <filter type="sort_by" column="0"/>
                     </options>
@@ -242,7 +243,9 @@
 
 **Data sources (release date)**
 
-Both normal and tumor tissues data are based on the Human Protein Atlas version 18.1 and Ensembl version 88.38. More information: https://www.proteinatlas.org/about/download
+23/10/2018: Both normal and tumor tissues data are based on the Human Protein Atlas version 18.1 and Ensembl version 88.38. 
+12/12/2019: Both normal and tumor tissues data are based on The Human Protein Atlas version 19 and Ensembl version 92.38.
+More information: https://www.proteinatlas.org/about/download
 
 -----