Mercurial > repos > proteore > proteore_expression_rnaseq_abbased

comparison add_expression_data.xml @ 13:0b279190f90d draft

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planemo upload commit 4ba1ebe7b3f5e3fabf78b5fed7ed0b92e2cbf9e5-dirty
author proteore
date Fri, 28 Jun 2019 05:01:37 -0400
parents dbeabf9bf091
children 133309fd6875
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12:dbeabf9bf091 13:0b279190f90d
1 <tool id="rna_abbased_data" name="Add expression data" version="2019.03.07"> 1 <tool id="rna_abbased_data" name="Add expression data" version="2019.06.27">
2 <description> (RNAseq or Immuno-assays)[Human Protein Atlas] 2 <description> (RNAseq or Immuno-assays)[Human Protein Atlas]
3 </description> 3 </description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="3.4.1">R</requirement> 5 <requirement type="package" version="3.4.1">R</requirement>
6 </requirements> 6 </requirements>
94 94
95 **Input** 95 **Input**
96 96
97 Input can be either a list of Ensembl gene (ENSG) IDs (copy/paste mode) or a file containing multiple fields with at least one column of Ensembl gene IDs. If your input file contains other type of IDs, please use the ID_Converter tool to create a column of Ensembl gene IDs. 97 Input can be either a list of Ensembl gene (ENSG) IDs (copy/paste mode) or a file containing multiple fields with at least one column of Ensembl gene IDs. If your input file contains other type of IDs, please use the ID_Converter tool to create a column of Ensembl gene IDs.
98 98
99 .. class:: warningmark
100
101 In copy/paste mode, the number of IDs considered in input is limited to 5000.
102
99 ----- 103 -----
100 104
101 **Parameters** 105 **Parameters**
102 106
103 "Select information to add to your list": choose by clicking the following information: 107 "Select information to add to your list": choose by clicking the following information:
130 134
131 ----- 135 -----
132 136
133 **Data sources (release date)** 137 **Data sources (release date)**
134 138
135 HPA source file (Human Protein Atlas version 18.1): http://www.proteinatlas.org/download/proteinatlas.tab.gz 139 HPA source file (data are based on the Human Protein Atlas version 18.1 and Ensembl version 88.38): http://www.proteinatlas.org/download/proteinatlas.tab.gz
136 140
137 ----- 141 -----
138 142
139 .. class:: infomark 143 .. class:: infomark
140 144
141 **Authors** 145 **Authors**
142 146
143 Lisa Peru, David Christiany, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck - CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR 147 Lisa Perus, David Christiany, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck - CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
144 148
145 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux - INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform, FR 149 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux - INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform, FR
146 150
147 This work has been partially funded through the French National Agency for Research (ANR) IFB project. 151 This work has been partially funded through the French National Agency for Research (ANR) IFB project.
148 152
149 Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool. 153 Help: contact@proteore.org for any questions or concerns about this tool.
150 154
151 ]]></help> 155 ]]></help>
152 156
153 <citations> 157 <citations>
154 </citations> 158 </citations>