Mercurial > repos > proteore > proteore_expression_rnaseq_abbased

diff add_expression_data.xml @ 13:0b279190f90d draft

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planemo upload commit 4ba1ebe7b3f5e3fabf78b5fed7ed0b92e2cbf9e5-dirty
author proteore
date Fri, 28 Jun 2019 05:01:37 -0400
parents dbeabf9bf091
children 133309fd6875
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--- a/add_expression_data.xml	Thu Mar 07 09:08:33 2019 -0500
+++ b/add_expression_data.xml	Fri Jun 28 05:01:37 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="rna_abbased_data" name="Add expression data" version="2019.03.07">
+<tool id="rna_abbased_data" name="Add expression data" version="2019.06.27">
 <description> (RNAseq or Immuno-assays)[Human Protein Atlas]
 </description>
 <requirements>
@@ -96,6 +96,10 @@
 
 Input can be either a list of Ensembl gene (ENSG) IDs (copy/paste mode) or a file containing multiple fields with at least one column of Ensembl gene IDs. If your input file contains other type of IDs, please use the ID_Converter tool to create a column of Ensembl gene IDs.  
 
+.. class:: warningmark
+	
+In copy/paste mode, the number of IDs considered in input is limited to 5000.
+
 -----
 
 **Parameters** 
@@ -132,7 +136,7 @@
 
 **Data sources (release date)**
 
-HPA source file (Human Protein Atlas version 18.1):  http://www.proteinatlas.org/download/proteinatlas.tab.gz
+HPA source file (data are based on the Human Protein Atlas version 18.1 and Ensembl version 88.38):  http://www.proteinatlas.org/download/proteinatlas.tab.gz
 
 -----
 
@@ -140,13 +144,13 @@
 
 **Authors**
 
-Lisa Peru, David Christiany, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck - CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
+Lisa Perus, David Christiany, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck - CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
 
 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux - INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform, FR
 
 This work has been partially funded through the French National Agency for Research (ANR) IFB project.
 
-Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.
+Help: contact@proteore.org for any questions or concerns about this tool.
 
 ]]></help>