Mercurial > repos > proteore > proteore_go_terms_enrich_comparison
changeset 4:d69aef3d17bb draft
planemo upload commit c9d70181a2b587e53dcc4b5885b74b625def6b8c-dirty
| author | proteore |
|---|---|
| date | Tue, 14 Jan 2020 08:50:30 -0500 |
| parents | a9720ab3d71e |
| children | a6e33a8ae6ff |
| files | GO_terms_enrich_comparison.xml |
| diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/GO_terms_enrich_comparison.xml Fri Dec 13 05:32:03 2019 -0500 +++ b/GO_terms_enrich_comparison.xml Tue Jan 14 08:50:30 2020 -0500 @@ -138,9 +138,7 @@ This tool is based on the R package clusterProfiler and allows to compare GO terms enrichment analyses of gene/protein sets. Given a list of gene set, this function will compute GO enrichment profiles of each gene list. -This tool calculates GO categories enrichment (over- or under-representation) for the IDs of the input list, compared to a background. -User has the possibility to use background corresponding to the whole organism or to a user-defined list. -In this latter case, user has the possibility to use the "Build tissue-specific expression dataset" ProteoRE tool to create this list according to your need. +This tool calculates GO categories enrichment (over- or under-representation) for the IDs of the input list. ----- @@ -171,7 +169,9 @@ **Output** Diagram output: graphical output in the form of a dot-plot (png, jpeg or pdf format), one figure for each GO category. -Text tables: with the following information GO category description (e.g.BP.Description), GO term identifier (e.g. BP.GOID) and GO term frequency (e.g. BP.Frequency)d graphics representing the repartition and/or enrichment of GO categories. One table and one graphic will be produced for each GO catagory. +Text tables: with the following information GO category description (e.g.BP.Description), GO term identifier (e.g. BP.GOID) +and GO term frequency (e.g. BP.Frequency). +One table and one graphic will be produced for each GO category. -----