comparison id_converter.xml @ 3:72860740f65f draft

planemo upload commit 08f1831e097df5d74bf60ff5955e7e9c8e524cc8-dirty

2:9b3a4ee0dcc6

                </param>
            </when>
            <when value="file" >
                <param name="file" type="data" format="txt,tabular" label="Choose a file that contains your list of IDs" help="" />
                <param name="header" type="boolean" checked="true" truevalue="true" falsevalue="false" label="Does your input file contain header?" />
                <param name="ncol" type="text" label="The column number of IDs to map" help='For example, fill in "c1" if it is the first column, "c2" if it is the second column and so on' />                
            </when>
        </conditional>
	    <conditional name="idti" >
            <param name="idtypein" type="select" label="Select type/source of identifier of your list" help="Please see example of IDs in help section" >
		        <option value="neXtProt_ID" >neXtProt ID (e.g. NX_P31946)</option>

.. class:: infomark

This tool converts human IDs using the following source files:

* HUMAN_9606_idmapping_selected.tab
    Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/

* nextprot_ac_list_all.txt 
    Downloaded from ftp://ftp.nextprot.org/pub/current_release/ac_lists/

-----

.. class:: warningmark

3:72860740f65f

                </param>
            </when>
            <when value="file" >
                <param name="file" type="data" format="txt,tabular" label="Choose a file that contains your list of IDs" help="" />
                <param name="header" type="boolean" checked="true" truevalue="true" falsevalue="false" label="Does your input file contain header?" />
                <param name="ncol" type="text" value="c1" label="The column number of IDs to map" help='For example, fill in "c1" if it is the first column, "c2" if it is the second column and so on' />                
            </when>
        </conditional>
	    <conditional name="idti" >
            <param name="idtypein" type="select" label="Select type/source of identifier of your list" help="Please see example of IDs in help section" >
		        <option value="neXtProt_ID" >neXtProt ID (e.g. NX_P31946)</option>

.. class:: infomark

This tool converts human IDs using the following source files:

* HUMAN_9606_idmapping_selected.tab (Uniprot released on 12/2017)
    Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/

* nextprot_ac_list_all.txt (Nextprot released on 01/08/2017)
    Downloaded from ftp://ftp.nextprot.org/pub/current_release/ac_lists/

-----

.. class:: warningmark