diff README.rst @ 7:59da262c572c draft

planemo upload commit b260bc0a316c1c74fa88d9b6dbf496127cd31d55-dirty

--- a/README.rst	Fri Mar 23 10:12:01 2018 -0400
+++ b/README.rst	Mon May 28 05:35:49 2018 -0400
@@ -17,7 +17,7 @@
 
 After choosing the type of input IDs, you can choose one or more types of IDs you would like to map to. 
 
-If your input is a list of IDs or a single-column file, the tool will return a file containing the mapped IDs. Please, note that a "NA" is returned when there is no corresponding ID.
+If your input is a list of IDs or a single-column file, the tool will return a file containing the mapped IDs.
 
 If your input is a multiple-column file, the mapped IDs column(s) will be added at the end of the input file.
 
@@ -31,13 +31,13 @@
 
 * Entrez gene ID (e.g. 7529)
 
-* RefSeq (NCBI) protein (e.g.  NP_003395.1)
+* RefSeq (NCBI) protein (e.g.  NP_003395.1; NP_647539.1; XP_016883528.1)
 
-* GI (NCBI GI number) ID assigned to each sequence record processed by NCBI (e.g. 21328448)
+* GI (NCBI GI number) ID assigned to each sequence record processed by NCBI (e.g. 21328448; 377656701; 67464627; 78101741)
 
-* Protein DataBank ID (e.g. 2BR9:A)
+* Protein DataBank ID (e.g. 2BR9:A; 3UAL:A;   3UBW:A)
 
-* GOterms (Gene Ontology) ID (e.g. GO:0070062)
+* GOterms (Gene Ontology) ID (e.g. GO:0070062; GO:0005925; GO:0042470; GO:0016020; GO:0005739; GO:0005634)
 
 * Protein Information Resource ID (e.g. S34755)
 
@@ -47,27 +47,14 @@
 
 * Ensembl gene ID (e.g. ENSG00000166913)
 
-* Ensembl transcript ID (e.g. ENST00000353703)
+* Ensembl transcript ID (e.g. ENST00000353703; ENST00000372839)
 
-* Ensembl protein ID (e.g. ENSP00000300161)
-
------
+* Ensembl protein ID (e.g. ENSP00000300161; ENSP00000361930)
 
-.. class:: infomark
+This tool converts human IDs using file built from:
 
-This tool converts human IDs using the following source files:
-
-* HUMAN_9606_idmapping_selected.tab (Uniprot released on 12/2017)
+* HUMAN_9606_idmapping_selected.tab
     Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/
 
-* nextprot_ac_list_all.txt (Nextprot released on 01/08/2017)
-    Downloaded from ftp://ftp.nextprot.org/pub/current_release/ac_lists/
-
------
-
-.. class:: warningmark
-
-Accession numbers with an hyphen ("-") that normally correspond to isoform are considered 
-(and will therefore be treated) as similar to its canonical form.
-
-For example, "Q71U36-2" will be treated as "Q71U36".
+* nextprot_ac_list_all.txt 
+    Downloaded from ftp://ftp.nextprot.org/pub/current_release/ac_lists/
\ No newline at end of file