Mercurial > repos > proteore > proteore_id_converter

Wrapper for ID Converter tool
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**Authors**

T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR

Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform

This work has been partially funded through the French National Agency for Research (ANR) IFB project.

Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.

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This tool converts a list of IDs to another identifier type, select the source and target type from the dropdown menus above (see below supported source and target types).

After choosing the type of input IDs, you can choose one or more types of IDs you would like to map to.

If your input is a list of IDs or a single-column file, the tool will return a file containing the mapped IDs.

If your input is a multiple-column file, the mapped IDs column(s) will be added at the end of the input file.

**Available databases**

* neXtProt ID (e.g. NX_P31946)

* Uniprot accession number (e.g. P31946)

* Uniprot ID (e.g 1433B_HUMAN)

* Entrez gene ID (e.g. 7529)

* RefSeq (NCBI) protein (e.g.  NP_003395.1; NP_647539.1; XP_016883528.1)

* GI (NCBI GI number) ID assigned to each sequence record processed by NCBI (e.g. 21328448; 377656701; 67464627; 78101741)

* Protein DataBank ID (e.g. 2BR9:A; 3UAL:A;   3UBW:A)

* GOterms (Gene Ontology) ID (e.g. GO:0070062; GO:0005925; GO:0042470; GO:0016020; GO:0005739; GO:0005634)

* Protein Information Resource ID (e.g. S34755)

* OMIM (Online Mendelian Inheritance in Man database) ID (e.g: 601289)

* Unigene ID (e.g. Hs.643544)

* Ensembl gene ID (e.g. ENSG00000166913)

* Ensembl transcript ID (e.g. ENST00000353703; ENST00000372839)

* Ensembl protein ID (e.g. ENSP00000300161; ENSP00000361930)

This tool converts human IDs using file built from:

* HUMAN_9606_idmapping_selected.tab
    Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/

* nextprot_ac_list_all.txt
    Downloaded from ftp://ftp.nextprot.org/pub/current_release/ac_lists/
author	proteore
date	Mon, 28 May 2018 05:35:49 -0400
parents	72860740f65f
children	659f1248f535