Mercurial > repos > proteore > proteore_maps_visualization
comparison tool-data/mmu_pathways.loc @ 0:9845dc9c7323 draft
planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
| author | proteore |
|---|---|
| date | Tue, 18 Dec 2018 10:02:54 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:9845dc9c7323 |
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| 1 #value name | |
| 2 mmu00010 Glycolysis / Gluconeogenesis | |
| 3 mmu00020 Citrate cycle (TCA cycle) | |
| 4 mmu00030 Pentose phosphate pathway | |
| 5 mmu00040 Pentose and glucuronate interconversions | |
| 6 mmu00051 Fructose and mannose metabolism | |
| 7 mmu00052 Galactose metabolism | |
| 8 mmu00053 Ascorbate and aldarate metabolism | |
| 9 mmu00061 Fatty acid biosynthesis | |
| 10 mmu00062 Fatty acid elongation | |
| 11 mmu00071 Fatty acid degradation | |
| 12 mmu00072 Synthesis and degradation of ketone bodies | |
| 13 mmu00100 Steroid biosynthesis | |
| 14 mmu00120 Primary bile acid biosynthesis | |
| 15 mmu00130 Ubiquinone and other terpenoid-quinone biosynthesis | |
| 16 mmu00140 Steroid hormone biosynthesis | |
| 17 mmu00190 Oxidative phosphorylation | |
| 18 mmu00220 Arginine biosynthesis | |
| 19 mmu00230 Purine metabolism | |
| 20 mmu00232 Caffeine metabolism | |
| 21 mmu00240 Pyrimidine metabolism | |
| 22 mmu00250 Alanine, aspartate and glutamate metabolism | |
| 23 mmu00260 Glycine, serine and threonine metabolism | |
| 24 mmu00270 Cysteine and methionine metabolism | |
| 25 mmu00280 Valine, leucine and isoleucine degradation | |
| 26 mmu00290 Valine, leucine and isoleucine biosynthesis | |
| 27 mmu00310 Lysine degradation | |
| 28 mmu00330 Arginine and proline metabolism | |
| 29 mmu00340 Histidine metabolism | |
| 30 mmu00350 Tyrosine metabolism | |
| 31 mmu00360 Phenylalanine metabolism | |
| 32 mmu00380 Tryptophan metabolism | |
| 33 mmu00400 Phenylalanine, tyrosine and tryptophan biosynthesis | |
| 34 mmu00410 beta-Alanine metabolism | |
| 35 mmu00430 Taurine and hypotaurine metabolism | |
| 36 mmu00440 Phosphonate and phosphinate metabolism | |
| 37 mmu00450 Selenocompound metabolism | |
| 38 mmu00471 D-Glutamine and D-glutamate metabolism | |
| 39 mmu00472 D-Arginine and D-ornithine metabolism | |
| 40 mmu00480 Glutathione metabolism | |
| 41 mmu00500 Starch and sucrose metabolism | |
| 42 mmu00510 N-Glycan biosynthesis | |
| 43 mmu00511 Other glycan degradation | |
| 44 mmu00512 Mucin type O-glycan biosynthesis | |
| 45 mmu00514 Other types of O-glycan biosynthesis | |
| 46 mmu00515 Mannose type O-glycan biosynthesis | |
| 47 mmu00520 Amino sugar and nucleotide sugar metabolism | |
| 48 mmu00524 Neomycin, kanamycin and gentamicin biosynthesis | |
| 49 mmu00531 Glycosaminoglycan degradation | |
| 50 mmu00532 Glycosaminoglycan biosynthesis | |
| 51 mmu00533 Glycosaminoglycan biosynthesis | |
| 52 mmu00534 Glycosaminoglycan biosynthesis | |
| 53 mmu00561 Glycerolipid metabolism | |
| 54 mmu00562 Inositol phosphate metabolism | |
| 55 mmu00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis | |
| 56 mmu00564 Glycerophospholipid metabolism | |
| 57 mmu00565 Ether lipid metabolism | |
| 58 mmu00590 Arachidonic acid metabolism | |
| 59 mmu00591 Linoleic acid metabolism | |
| 60 mmu00592 alpha-Linolenic acid metabolism | |
| 61 mmu00600 Sphingolipid metabolism | |
| 62 mmu00601 Glycosphingolipid biosynthesis | |
| 63 mmu00603 Glycosphingolipid biosynthesis | |
| 64 mmu00604 Glycosphingolipid biosynthesis | |
| 65 mmu00620 Pyruvate metabolism | |
| 66 mmu00630 Glyoxylate and dicarboxylate metabolism | |
| 67 mmu00640 Propanoate metabolism | |
| 68 mmu00650 Butanoate metabolism | |
| 69 mmu00670 One carbon pool by folate | |
| 70 mmu00730 Thiamine metabolism | |
| 71 mmu00740 Riboflavin metabolism | |
| 72 mmu00750 Vitamin B6 metabolism | |
| 73 mmu00760 Nicotinate and nicotinamide metabolism | |
| 74 mmu00770 Pantothenate and CoA biosynthesis | |
| 75 mmu00780 Biotin metabolism | |
| 76 mmu00785 Lipoic acid metabolism | |
| 77 mmu00790 Folate biosynthesis | |
| 78 mmu00830 Retinol metabolism | |
| 79 mmu00860 Porphyrin and chlorophyll metabolism | |
| 80 mmu00900 Terpenoid backbone biosynthesis | |
| 81 mmu00910 Nitrogen metabolism | |
| 82 mmu00920 Sulfur metabolism | |
| 83 mmu00970 Aminoacyl-tRNA biosynthesis | |
| 84 mmu00980 Metabolism of xenobiotics by cytochrome P450 | |
| 85 mmu00982 Drug metabolism | |
| 86 mmu00983 Drug metabolism | |
| 87 mmu01040 Biosynthesis of unsaturated fatty acids | |
| 88 mmu01100 Metabolic pathways | |
| 89 mmu01200 Carbon metabolism | |
| 90 mmu01210 2-Oxocarboxylic acid metabolism | |
| 91 mmu01212 Fatty acid metabolism | |
| 92 mmu01230 Biosynthesis of amino acids | |
| 93 mmu01521 EGFR tyrosine kinase inhibitor resistance | |
| 94 mmu01522 Endocrine resistance | |
| 95 mmu01523 Antifolate resistance | |
| 96 mmu01524 Platinum drug resistance | |
| 97 mmu02010 ABC transporters | |
| 98 mmu03008 Ribosome biogenesis in eukaryotes | |
| 99 mmu03010 Ribosome | |
| 100 mmu03013 RNA transport | |
| 101 mmu03015 mRNA surveillance pathway | |
| 102 mmu03018 RNA degradation | |
| 103 mmu03020 RNA polymerase | |
| 104 mmu03022 Basal transcription factors | |
| 105 mmu03030 DNA replication | |
| 106 mmu03040 Spliceosome | |
| 107 mmu03050 Proteasome | |
| 108 mmu03060 Protein export | |
| 109 mmu03320 PPAR signaling pathway | |
| 110 mmu03410 Base excision repair | |
| 111 mmu03420 Nucleotide excision repair | |
| 112 mmu03430 Mismatch repair | |
| 113 mmu03440 Homologous recombination | |
| 114 mmu03450 Non-homologous end-joining | |
| 115 mmu03460 Fanconi anemia pathway | |
| 116 mmu04010 MAPK signaling pathway | |
| 117 mmu04012 ErbB signaling pathway | |
| 118 mmu04014 Ras signaling pathway | |
| 119 mmu04015 Rap1 signaling pathway | |
| 120 mmu04020 Calcium signaling pathway | |
| 121 mmu04022 cGMP-PKG signaling pathway | |
| 122 mmu04024 cAMP signaling pathway | |
| 123 mmu04060 Cytokine-cytokine receptor interaction | |
| 124 mmu04062 Chemokine signaling pathway | |
| 125 mmu04064 NF-kappa B signaling pathway | |
| 126 mmu04066 HIF-1 signaling pathway | |
| 127 mmu04068 FoxO signaling pathway | |
| 128 mmu04070 Phosphatidylinositol signaling system | |
| 129 mmu04071 Sphingolipid signaling pathway | |
| 130 mmu04072 Phospholipase D signaling pathway | |
| 131 mmu04080 Neuroactive ligand-receptor interaction | |
| 132 mmu04110 Cell cycle | |
| 133 mmu04114 Oocyte meiosis | |
| 134 mmu04115 p53 signaling pathway | |
| 135 mmu04120 Ubiquitin mediated proteolysis | |
| 136 mmu04122 Sulfur relay system | |
| 137 mmu04130 SNARE interactions in vesicular transport | |
| 138 mmu04136 Autophagy | |
| 139 mmu04137 Mitophagy | |
| 140 mmu04140 Autophagy | |
| 141 mmu04141 Protein processing in endoplasmic reticulum | |
| 142 mmu04142 Lysosome | |
| 143 mmu04144 Endocytosis | |
| 144 mmu04145 Phagosome | |
| 145 mmu04146 Peroxisome | |
| 146 mmu04150 mTOR signaling pathway | |
| 147 mmu04151 PI3K-Akt signaling pathway | |
| 148 mmu04152 AMPK signaling pathway | |
| 149 mmu04210 Apoptosis | |
| 150 mmu04211 Longevity regulating pathway | |
| 151 mmu04213 Longevity regulating pathway | |
| 152 mmu04215 Apoptosis | |
| 153 mmu04216 Ferroptosis | |
| 154 mmu04217 Necroptosis | |
| 155 mmu04218 Cellular senescence | |
| 156 mmu04260 Cardiac muscle contraction | |
| 157 mmu04261 Adrenergic signaling in cardiomyocytes | |
| 158 mmu04270 Vascular smooth muscle contraction | |
| 159 mmu04310 Wnt signaling pathway | |
| 160 mmu04330 Notch signaling pathway | |
| 161 mmu04340 Hedgehog signaling pathway | |
| 162 mmu04350 TGF-beta signaling pathway | |
| 163 mmu04360 Axon guidance | |
| 164 mmu04370 VEGF signaling pathway | |
| 165 mmu04371 Apelin signaling pathway | |
| 166 mmu04380 Osteoclast differentiation | |
| 167 mmu04390 Hippo signaling pathway | |
| 168 mmu04392 Hippo signaling pathway | |
| 169 mmu04510 Focal adhesion | |
| 170 mmu04512 ECM-receptor interaction | |
| 171 mmu04514 Cell adhesion molecules (CAMs) | |
| 172 mmu04520 Adherens junction | |
| 173 mmu04530 Tight junction | |
| 174 mmu04540 Gap junction | |
| 175 mmu04550 Signaling pathways regulating pluripotency of stem cells | |
| 176 mmu04610 Complement and coagulation cascades | |
| 177 mmu04611 Platelet activation | |
| 178 mmu04612 Antigen processing and presentation | |
| 179 mmu04614 Renin-angiotensin system | |
| 180 mmu04620 Toll-like receptor signaling pathway | |
| 181 mmu04621 NOD-like receptor signaling pathway | |
| 182 mmu04622 RIG-I-like receptor signaling pathway | |
| 183 mmu04623 Cytosolic DNA-sensing pathway | |
| 184 mmu04625 C-type lectin receptor signaling pathway | |
| 185 mmu04630 Jak-STAT signaling pathway | |
| 186 mmu04640 Hematopoietic cell lineage | |
| 187 mmu04650 Natural killer cell mediated cytotoxicity | |
| 188 mmu04657 IL-17 signaling pathway | |
| 189 mmu04658 Th1 and Th2 cell differentiation | |
| 190 mmu04659 Th17 cell differentiation | |
| 191 mmu04660 T cell receptor signaling pathway | |
| 192 mmu04662 B cell receptor signaling pathway | |
| 193 mmu04664 Fc epsilon RI signaling pathway | |
| 194 mmu04666 Fc gamma R-mediated phagocytosis | |
| 195 mmu04668 TNF signaling pathway | |
| 196 mmu04670 Leukocyte transendothelial migration | |
| 197 mmu04672 Intestinal immune network for IgA production | |
| 198 mmu04710 Circadian rhythm | |
| 199 mmu04713 Circadian entrainment | |
| 200 mmu04714 Thermogenesis | |
| 201 mmu04720 Long-term potentiation | |
| 202 mmu04721 Synaptic vesicle cycle | |
| 203 mmu04722 Neurotrophin signaling pathway | |
| 204 mmu04723 Retrograde endocannabinoid signaling | |
| 205 mmu04724 Glutamatergic synapse | |
| 206 mmu04725 Cholinergic synapse | |
| 207 mmu04726 Serotonergic synapse | |
| 208 mmu04727 GABAergic synapse | |
| 209 mmu04728 Dopaminergic synapse | |
| 210 mmu04730 Long-term depression | |
| 211 mmu04740 Olfactory transduction | |
| 212 mmu04742 Taste transduction | |
| 213 mmu04744 Phototransduction | |
| 214 mmu04750 Inflammatory mediator regulation of TRP channels | |
| 215 mmu04810 Regulation of actin cytoskeleton | |
| 216 mmu04910 Insulin signaling pathway | |
| 217 mmu04911 Insulin secretion | |
| 218 mmu04912 GnRH signaling pathway | |
| 219 mmu04913 Ovarian steroidogenesis | |
| 220 mmu04914 Progesterone-mediated oocyte maturation | |
| 221 mmu04915 Estrogen signaling pathway | |
| 222 mmu04916 Melanogenesis | |
| 223 mmu04917 Prolactin signaling pathway | |
| 224 mmu04918 Thyroid hormone synthesis | |
| 225 mmu04919 Thyroid hormone signaling pathway | |
| 226 mmu04920 Adipocytokine signaling pathway | |
| 227 mmu04921 Oxytocin signaling pathway | |
| 228 mmu04922 Glucagon signaling pathway | |
| 229 mmu04923 Regulation of lipolysis in adipocytes | |
| 230 mmu04924 Renin secretion | |
| 231 mmu04925 Aldosterone synthesis and secretion | |
| 232 mmu04926 Relaxin signaling pathway | |
| 233 mmu04927 Cortisol synthesis and secretion | |
| 234 mmu04928 Parathyroid hormone synthesis, secretion and action | |
| 235 mmu04930 Type II diabetes mellitus | |
| 236 mmu04931 Insulin resistance | |
| 237 mmu04932 Non-alcoholic fatty liver disease (NAFLD) | |
| 238 mmu04933 AGE-RAGE signaling pathway in diabetic complications | |
| 239 mmu04934 Cushing's syndrome | |
| 240 mmu04940 Type I diabetes mellitus | |
| 241 mmu04950 Maturity onset diabetes of the young | |
| 242 mmu04960 Aldosterone-regulated sodium reabsorption | |
| 243 mmu04961 Endocrine and other factor-regulated calcium reabsorption | |
| 244 mmu04962 Vasopressin-regulated water reabsorption | |
| 245 mmu04964 Proximal tubule bicarbonate reclamation | |
| 246 mmu04966 Collecting duct acid secretion | |
| 247 mmu04970 Salivary secretion | |
| 248 mmu04971 Gastric acid secretion | |
| 249 mmu04972 Pancreatic secretion | |
| 250 mmu04973 Carbohydrate digestion and absorption | |
| 251 mmu04974 Protein digestion and absorption | |
| 252 mmu04975 Fat digestion and absorption | |
| 253 mmu04976 Bile secretion | |
| 254 mmu04977 Vitamin digestion and absorption | |
| 255 mmu04978 Mineral absorption | |
| 256 mmu04979 Cholesterol metabolism | |
| 257 mmu05010 Alzheimer's disease | |
| 258 mmu05012 Parkinson's disease | |
| 259 mmu05014 Amyotrophic lateral sclerosis (ALS) | |
| 260 mmu05016 Huntington's disease | |
| 261 mmu05020 Prion diseases | |
| 262 mmu05030 Cocaine addiction | |
| 263 mmu05031 Amphetamine addiction | |
| 264 mmu05032 Morphine addiction | |
| 265 mmu05033 Nicotine addiction | |
| 266 mmu05034 Alcoholism | |
| 267 mmu05100 Bacterial invasion of epithelial cells | |
| 268 mmu05132 Salmonella infection | |
| 269 mmu05133 Pertussis | |
| 270 mmu05134 Legionellosis | |
| 271 mmu05140 Leishmaniasis | |
| 272 mmu05142 Chagas disease (American trypanosomiasis) | |
| 273 mmu05143 African trypanosomiasis | |
| 274 mmu05144 Malaria | |
| 275 mmu05145 Toxoplasmosis | |
| 276 mmu05146 Amoebiasis | |
| 277 mmu05150 Staphylococcus aureus infection | |
| 278 mmu05152 Tuberculosis | |
| 279 mmu05160 Hepatitis C | |
| 280 mmu05161 Hepatitis B | |
| 281 mmu05162 Measles | |
| 282 mmu05163 Human cytomegalovirus infection | |
| 283 mmu05164 Influenza A | |
| 284 mmu05165 Human papillomavirus infection | |
| 285 mmu05166 HTLV-I infection | |
| 286 mmu05167 Kaposi's sarcoma-associated herpesvirus infection | |
| 287 mmu05168 Herpes simplex infection | |
| 288 mmu05169 Epstein-Barr virus infection | |
| 289 mmu05200 Pathways in cancer | |
| 290 mmu05202 Transcriptional misregulation in cancer | |
| 291 mmu05203 Viral carcinogenesis | |
| 292 mmu05204 Chemical carcinogenesis | |
| 293 mmu05205 Proteoglycans in cancer | |
| 294 mmu05206 MicroRNAs in cancer | |
| 295 mmu05210 Colorectal cancer | |
| 296 mmu05211 Renal cell carcinoma | |
| 297 mmu05212 Pancreatic cancer | |
| 298 mmu05213 Endometrial cancer | |
| 299 mmu05214 Glioma | |
| 300 mmu05215 Prostate cancer | |
| 301 mmu05216 Thyroid cancer | |
| 302 mmu05217 Basal cell carcinoma | |
| 303 mmu05218 Melanoma | |
| 304 mmu05219 Bladder cancer | |
| 305 mmu05220 Chronic myeloid leukemia | |
| 306 mmu05221 Acute myeloid leukemia | |
| 307 mmu05222 Small cell lung cancer | |
| 308 mmu05223 Non-small cell lung cancer | |
| 309 mmu05224 Breast cancer | |
| 310 mmu05225 Hepatocellular carcinoma | |
| 311 mmu05226 Gastric cancer | |
| 312 mmu05230 Central carbon metabolism in cancer | |
| 313 mmu05231 Choline metabolism in cancer | |
| 314 mmu05310 Asthma | |
| 315 mmu05320 Autoimmune thyroid disease | |
| 316 mmu05321 Inflammatory bowel disease (IBD) | |
| 317 mmu05322 Systemic lupus erythematosus | |
| 318 mmu05323 Rheumatoid arthritis | |
| 319 mmu05330 Allograft rejection | |
| 320 mmu05332 Graft-versus-host disease | |
| 321 mmu05340 Primary immunodeficiency | |
| 322 mmu05410 Hypertrophic cardiomyopathy (HCM) | |
| 323 mmu05412 Arrhythmogenic right ventricular cardiomyopathy (ARVC) | |
| 324 mmu05414 Dilated cardiomyopathy (DCM) | |
| 325 mmu05416 Viral myocarditis | |
| 326 mmu05418 Fluid shear stress and atherosclerosis |