diff tool-data/mmu_pathways.loc @ 0:9845dc9c7323 draft

planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/mmu_pathways.loc	Tue Dec 18 10:02:54 2018 -0500
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+#value	name
+mmu00010	Glycolysis / Gluconeogenesis
+mmu00020	Citrate cycle (TCA cycle)
+mmu00030	Pentose phosphate pathway
+mmu00040	Pentose and glucuronate interconversions
+mmu00051	Fructose and mannose metabolism
+mmu00052	Galactose metabolism
+mmu00053	Ascorbate and aldarate metabolism
+mmu00061	Fatty acid biosynthesis
+mmu00062	Fatty acid elongation
+mmu00071	Fatty acid degradation
+mmu00072	Synthesis and degradation of ketone bodies
+mmu00100	Steroid biosynthesis
+mmu00120	Primary bile acid biosynthesis
+mmu00130	Ubiquinone and other terpenoid-quinone biosynthesis
+mmu00140	Steroid hormone biosynthesis
+mmu00190	Oxidative phosphorylation
+mmu00220	Arginine biosynthesis
+mmu00230	Purine metabolism
+mmu00232	Caffeine metabolism
+mmu00240	Pyrimidine metabolism
+mmu00250	Alanine, aspartate and glutamate metabolism
+mmu00260	Glycine, serine and threonine metabolism
+mmu00270	Cysteine and methionine metabolism
+mmu00280	Valine, leucine and isoleucine degradation
+mmu00290	Valine, leucine and isoleucine biosynthesis
+mmu00310	Lysine degradation
+mmu00330	Arginine and proline metabolism
+mmu00340	Histidine metabolism
+mmu00350	Tyrosine metabolism
+mmu00360	Phenylalanine metabolism
+mmu00380	Tryptophan metabolism
+mmu00400	Phenylalanine, tyrosine and tryptophan biosynthesis
+mmu00410	beta-Alanine metabolism
+mmu00430	Taurine and hypotaurine metabolism
+mmu00440	Phosphonate and phosphinate metabolism
+mmu00450	Selenocompound metabolism
+mmu00471	D-Glutamine and D-glutamate metabolism
+mmu00472	D-Arginine and D-ornithine metabolism
+mmu00480	Glutathione metabolism
+mmu00500	Starch and sucrose metabolism
+mmu00510	N-Glycan biosynthesis
+mmu00511	Other glycan degradation
+mmu00512	Mucin type O-glycan biosynthesis
+mmu00514	Other types of O-glycan biosynthesis
+mmu00515	Mannose type O-glycan biosynthesis
+mmu00520	Amino sugar and nucleotide sugar metabolism
+mmu00524	Neomycin, kanamycin and gentamicin biosynthesis
+mmu00531	Glycosaminoglycan degradation
+mmu00532	Glycosaminoglycan biosynthesis
+mmu00533	Glycosaminoglycan biosynthesis
+mmu00534	Glycosaminoglycan biosynthesis
+mmu00561	Glycerolipid metabolism
+mmu00562	Inositol phosphate metabolism
+mmu00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
+mmu00564	Glycerophospholipid metabolism
+mmu00565	Ether lipid metabolism
+mmu00590	Arachidonic acid metabolism
+mmu00591	Linoleic acid metabolism
+mmu00592	alpha-Linolenic acid metabolism
+mmu00600	Sphingolipid metabolism
+mmu00601	Glycosphingolipid biosynthesis
+mmu00603	Glycosphingolipid biosynthesis
+mmu00604	Glycosphingolipid biosynthesis
+mmu00620	Pyruvate metabolism
+mmu00630	Glyoxylate and dicarboxylate metabolism
+mmu00640	Propanoate metabolism
+mmu00650	Butanoate metabolism
+mmu00670	One carbon pool by folate
+mmu00730	Thiamine metabolism
+mmu00740	Riboflavin metabolism
+mmu00750	Vitamin B6 metabolism
+mmu00760	Nicotinate and nicotinamide metabolism
+mmu00770	Pantothenate and CoA biosynthesis
+mmu00780	Biotin metabolism
+mmu00785	Lipoic acid metabolism
+mmu00790	Folate biosynthesis
+mmu00830	Retinol metabolism
+mmu00860	Porphyrin and chlorophyll metabolism
+mmu00900	Terpenoid backbone biosynthesis
+mmu00910	Nitrogen metabolism
+mmu00920	Sulfur metabolism
+mmu00970	Aminoacyl-tRNA biosynthesis
+mmu00980	Metabolism of xenobiotics by cytochrome P450
+mmu00982	Drug metabolism
+mmu00983	Drug metabolism
+mmu01040	Biosynthesis of unsaturated fatty acids
+mmu01100	Metabolic pathways
+mmu01200	Carbon metabolism
+mmu01210	2-Oxocarboxylic acid metabolism
+mmu01212	Fatty acid metabolism
+mmu01230	Biosynthesis of amino acids
+mmu01521	EGFR tyrosine kinase inhibitor resistance
+mmu01522	Endocrine resistance
+mmu01523	Antifolate resistance
+mmu01524	Platinum drug resistance
+mmu02010	ABC transporters
+mmu03008	Ribosome biogenesis in eukaryotes
+mmu03010	Ribosome
+mmu03013	RNA transport
+mmu03015	mRNA surveillance pathway
+mmu03018	RNA degradation
+mmu03020	RNA polymerase
+mmu03022	Basal transcription factors
+mmu03030	DNA replication
+mmu03040	Spliceosome
+mmu03050	Proteasome
+mmu03060	Protein export
+mmu03320	PPAR signaling pathway
+mmu03410	Base excision repair
+mmu03420	Nucleotide excision repair
+mmu03430	Mismatch repair
+mmu03440	Homologous recombination
+mmu03450	Non-homologous end-joining
+mmu03460	Fanconi anemia pathway
+mmu04010	MAPK signaling pathway
+mmu04012	ErbB signaling pathway
+mmu04014	Ras signaling pathway
+mmu04015	Rap1 signaling pathway
+mmu04020	Calcium signaling pathway
+mmu04022	cGMP-PKG signaling pathway
+mmu04024	cAMP signaling pathway
+mmu04060	Cytokine-cytokine receptor interaction
+mmu04062	Chemokine signaling pathway
+mmu04064	NF-kappa B signaling pathway
+mmu04066	HIF-1 signaling pathway
+mmu04068	FoxO signaling pathway
+mmu04070	Phosphatidylinositol signaling system
+mmu04071	Sphingolipid signaling pathway
+mmu04072	Phospholipase D signaling pathway
+mmu04080	Neuroactive ligand-receptor interaction
+mmu04110	Cell cycle
+mmu04114	Oocyte meiosis
+mmu04115	p53 signaling pathway
+mmu04120	Ubiquitin mediated proteolysis
+mmu04122	Sulfur relay system
+mmu04130	SNARE interactions in vesicular transport
+mmu04136	Autophagy
+mmu04137	Mitophagy
+mmu04140	Autophagy
+mmu04141	Protein processing in endoplasmic reticulum
+mmu04142	Lysosome
+mmu04144	Endocytosis
+mmu04145	Phagosome
+mmu04146	Peroxisome
+mmu04150	mTOR signaling pathway
+mmu04151	PI3K-Akt signaling pathway
+mmu04152	AMPK signaling pathway
+mmu04210	Apoptosis
+mmu04211	Longevity regulating pathway
+mmu04213	Longevity regulating pathway
+mmu04215	Apoptosis
+mmu04216	Ferroptosis
+mmu04217	Necroptosis
+mmu04218	Cellular senescence
+mmu04260	Cardiac muscle contraction
+mmu04261	Adrenergic signaling in cardiomyocytes
+mmu04270	Vascular smooth muscle contraction
+mmu04310	Wnt signaling pathway
+mmu04330	Notch signaling pathway
+mmu04340	Hedgehog signaling pathway
+mmu04350	TGF-beta signaling pathway
+mmu04360	Axon guidance
+mmu04370	VEGF signaling pathway
+mmu04371	Apelin signaling pathway
+mmu04380	Osteoclast differentiation
+mmu04390	Hippo signaling pathway
+mmu04392	Hippo signaling pathway
+mmu04510	Focal adhesion
+mmu04512	ECM-receptor interaction
+mmu04514	Cell adhesion molecules (CAMs)
+mmu04520	Adherens junction
+mmu04530	Tight junction
+mmu04540	Gap junction
+mmu04550	Signaling pathways regulating pluripotency of stem cells
+mmu04610	Complement and coagulation cascades
+mmu04611	Platelet activation
+mmu04612	Antigen processing and presentation
+mmu04614	Renin-angiotensin system
+mmu04620	Toll-like receptor signaling pathway
+mmu04621	NOD-like receptor signaling pathway
+mmu04622	RIG-I-like receptor signaling pathway
+mmu04623	Cytosolic DNA-sensing pathway
+mmu04625	C-type lectin receptor signaling pathway
+mmu04630	Jak-STAT signaling pathway
+mmu04640	Hematopoietic cell lineage
+mmu04650	Natural killer cell mediated cytotoxicity
+mmu04657	IL-17 signaling pathway
+mmu04658	Th1 and Th2 cell differentiation
+mmu04659	Th17 cell differentiation
+mmu04660	T cell receptor signaling pathway
+mmu04662	B cell receptor signaling pathway
+mmu04664	Fc epsilon RI signaling pathway
+mmu04666	Fc gamma R-mediated phagocytosis
+mmu04668	TNF signaling pathway
+mmu04670	Leukocyte transendothelial migration
+mmu04672	Intestinal immune network for IgA production
+mmu04710	Circadian rhythm
+mmu04713	Circadian entrainment
+mmu04714	Thermogenesis
+mmu04720	Long-term potentiation
+mmu04721	Synaptic vesicle cycle
+mmu04722	Neurotrophin signaling pathway
+mmu04723	Retrograde endocannabinoid signaling
+mmu04724	Glutamatergic synapse
+mmu04725	Cholinergic synapse
+mmu04726	Serotonergic synapse
+mmu04727	GABAergic synapse
+mmu04728	Dopaminergic synapse
+mmu04730	Long-term depression
+mmu04740	Olfactory transduction
+mmu04742	Taste transduction
+mmu04744	Phototransduction
+mmu04750	Inflammatory mediator regulation of TRP channels
+mmu04810	Regulation of actin cytoskeleton
+mmu04910	Insulin signaling pathway
+mmu04911	Insulin secretion
+mmu04912	GnRH signaling pathway
+mmu04913	Ovarian steroidogenesis
+mmu04914	Progesterone-mediated oocyte maturation
+mmu04915	Estrogen signaling pathway
+mmu04916	Melanogenesis
+mmu04917	Prolactin signaling pathway
+mmu04918	Thyroid hormone synthesis
+mmu04919	Thyroid hormone signaling pathway
+mmu04920	Adipocytokine signaling pathway
+mmu04921	Oxytocin signaling pathway
+mmu04922	Glucagon signaling pathway
+mmu04923	Regulation of lipolysis in adipocytes
+mmu04924	Renin secretion
+mmu04925	Aldosterone synthesis and secretion
+mmu04926	Relaxin signaling pathway
+mmu04927	Cortisol synthesis and secretion
+mmu04928	Parathyroid hormone synthesis, secretion and action
+mmu04930	Type II diabetes mellitus
+mmu04931	Insulin resistance
+mmu04932	Non-alcoholic fatty liver disease (NAFLD)
+mmu04933	AGE-RAGE signaling pathway in diabetic complications
+mmu04934	Cushing's syndrome
+mmu04940	Type I diabetes mellitus
+mmu04950	Maturity onset diabetes of the young
+mmu04960	Aldosterone-regulated sodium reabsorption
+mmu04961	Endocrine and other factor-regulated calcium reabsorption
+mmu04962	Vasopressin-regulated water reabsorption
+mmu04964	Proximal tubule bicarbonate reclamation
+mmu04966	Collecting duct acid secretion
+mmu04970	Salivary secretion
+mmu04971	Gastric acid secretion
+mmu04972	Pancreatic secretion
+mmu04973	Carbohydrate digestion and absorption
+mmu04974	Protein digestion and absorption
+mmu04975	Fat digestion and absorption
+mmu04976	Bile secretion
+mmu04977	Vitamin digestion and absorption
+mmu04978	Mineral absorption
+mmu04979	Cholesterol metabolism
+mmu05010	Alzheimer's disease
+mmu05012	Parkinson's disease
+mmu05014	Amyotrophic lateral sclerosis (ALS)
+mmu05016	Huntington's disease
+mmu05020	Prion diseases
+mmu05030	Cocaine addiction
+mmu05031	Amphetamine addiction
+mmu05032	Morphine addiction
+mmu05033	Nicotine addiction
+mmu05034	Alcoholism
+mmu05100	Bacterial invasion of epithelial cells
+mmu05132	Salmonella infection
+mmu05133	Pertussis
+mmu05134	Legionellosis
+mmu05140	Leishmaniasis
+mmu05142	Chagas disease (American trypanosomiasis)
+mmu05143	African trypanosomiasis
+mmu05144	Malaria
+mmu05145	Toxoplasmosis
+mmu05146	Amoebiasis
+mmu05150	Staphylococcus aureus infection
+mmu05152	Tuberculosis
+mmu05160	Hepatitis C
+mmu05161	Hepatitis B
+mmu05162	Measles
+mmu05163	Human cytomegalovirus infection
+mmu05164	Influenza A
+mmu05165	Human papillomavirus infection
+mmu05166	HTLV-I infection
+mmu05167	Kaposi's sarcoma-associated herpesvirus infection
+mmu05168	Herpes simplex infection
+mmu05169	Epstein-Barr virus infection
+mmu05200	Pathways in cancer
+mmu05202	Transcriptional misregulation in cancer
+mmu05203	Viral carcinogenesis
+mmu05204	Chemical carcinogenesis
+mmu05205	Proteoglycans in cancer
+mmu05206	MicroRNAs in cancer
+mmu05210	Colorectal cancer
+mmu05211	Renal cell carcinoma
+mmu05212	Pancreatic cancer
+mmu05213	Endometrial cancer
+mmu05214	Glioma
+mmu05215	Prostate cancer
+mmu05216	Thyroid cancer
+mmu05217	Basal cell carcinoma
+mmu05218	Melanoma
+mmu05219	Bladder cancer
+mmu05220	Chronic myeloid leukemia
+mmu05221	Acute myeloid leukemia
+mmu05222	Small cell lung cancer
+mmu05223	Non-small cell lung cancer
+mmu05224	Breast cancer
+mmu05225	Hepatocellular carcinoma
+mmu05226	Gastric cancer
+mmu05230	Central carbon metabolism in cancer
+mmu05231	Choline metabolism in cancer
+mmu05310	Asthma
+mmu05320	Autoimmune thyroid disease
+mmu05321	Inflammatory bowel disease (IBD)
+mmu05322	Systemic lupus erythematosus
+mmu05323	Rheumatoid arthritis
+mmu05330	Allograft rejection
+mmu05332	Graft-versus-host disease
+mmu05340	Primary immunodeficiency
+mmu05410	Hypertrophic cardiomyopathy (HCM)
+mmu05412	Arrhythmogenic right ventricular cardiomyopathy (ARVC)
+mmu05414	Dilated cardiomyopathy (DCM)
+mmu05416	Viral myocarditis
+mmu05418	Fluid shear stress and atherosclerosis