diff tool-data/rno_pathways.loc @ 0:9845dc9c7323 draft

planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/rno_pathways.loc	Tue Dec 18 10:02:54 2018 -0500
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+rno00010	Glycolysis / Gluconeogenesis
+rno00020	Citrate cycle (TCA cycle)
+rno00030	Pentose phosphate pathway
+rno00040	Pentose and glucuronate interconversions
+rno00051	Fructose and mannose metabolism
+rno00052	Galactose metabolism
+rno00053	Ascorbate and aldarate metabolism
+rno00061	Fatty acid biosynthesis
+rno00062	Fatty acid elongation
+rno00071	Fatty acid degradation
+rno00072	Synthesis and degradation of ketone bodies
+rno00100	Steroid biosynthesis
+rno00120	Primary bile acid biosynthesis
+rno00130	Ubiquinone and other terpenoid-quinone biosynthesis
+rno00140	Steroid hormone biosynthesis
+rno00190	Oxidative phosphorylation
+rno00220	Arginine biosynthesis
+rno00230	Purine metabolism
+rno00232	Caffeine metabolism
+rno00240	Pyrimidine metabolism
+rno00250	Alanine, aspartate and glutamate metabolism
+rno00260	Glycine, serine and threonine metabolism
+rno00270	Cysteine and methionine metabolism
+rno00280	Valine, leucine and isoleucine degradation
+rno00290	Valine, leucine and isoleucine biosynthesis
+rno00310	Lysine degradation
+rno00330	Arginine and proline metabolism
+rno00340	Histidine metabolism
+rno00350	Tyrosine metabolism
+rno00360	Phenylalanine metabolism
+rno00380	Tryptophan metabolism
+rno00400	Phenylalanine, tyrosine and tryptophan biosynthesis
+rno00410	beta-Alanine metabolism
+rno00430	Taurine and hypotaurine metabolism
+rno00440	Phosphonate and phosphinate metabolism
+rno00450	Selenocompound metabolism
+rno00471	D-Glutamine and D-glutamate metabolism
+rno00472	D-Arginine and D-ornithine metabolism
+rno00480	Glutathione metabolism
+rno00500	Starch and sucrose metabolism
+rno00510	N-Glycan biosynthesis
+rno00511	Other glycan degradation
+rno00512	Mucin type O-glycan biosynthesis
+rno00514	Other types of O-glycan biosynthesis
+rno00515	Mannose type O-glycan biosynthesis
+rno00520	Amino sugar and nucleotide sugar metabolism
+rno00524	Neomycin, kanamycin and gentamicin biosynthesis
+rno00531	Glycosaminoglycan degradation
+rno00532	Glycosaminoglycan biosynthesis
+rno00533	Glycosaminoglycan biosynthesis
+rno00534	Glycosaminoglycan biosynthesis
+rno00561	Glycerolipid metabolism
+rno00562	Inositol phosphate metabolism
+rno00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
+rno00564	Glycerophospholipid metabolism
+rno00565	Ether lipid metabolism
+rno00590	Arachidonic acid metabolism
+rno00591	Linoleic acid metabolism
+rno00592	alpha-Linolenic acid metabolism
+rno00600	Sphingolipid metabolism
+rno00601	Glycosphingolipid biosynthesis
+rno00603	Glycosphingolipid biosynthesis
+rno00604	Glycosphingolipid biosynthesis
+rno00620	Pyruvate metabolism
+rno00630	Glyoxylate and dicarboxylate metabolism
+rno00640	Propanoate metabolism
+rno00650	Butanoate metabolism
+rno00670	One carbon pool by folate
+rno00730	Thiamine metabolism
+rno00740	Riboflavin metabolism
+rno00750	Vitamin B6 metabolism
+rno00760	Nicotinate and nicotinamide metabolism
+rno00770	Pantothenate and CoA biosynthesis
+rno00780	Biotin metabolism
+rno00785	Lipoic acid metabolism
+rno00790	Folate biosynthesis
+rno00830	Retinol metabolism
+rno00860	Porphyrin and chlorophyll metabolism
+rno00900	Terpenoid backbone biosynthesis
+rno00910	Nitrogen metabolism
+rno00920	Sulfur metabolism
+rno00970	Aminoacyl-tRNA biosynthesis
+rno00980	Metabolism of xenobiotics by cytochrome P450
+rno00982	Drug metabolism
+rno00983	Drug metabolism
+rno01040	Biosynthesis of unsaturated fatty acids
+rno01100	Metabolic pathways
+rno01200	Carbon metabolism
+rno01210	2-Oxocarboxylic acid metabolism
+rno01212	Fatty acid metabolism
+rno01230	Biosynthesis of amino acids
+rno01521	EGFR tyrosine kinase inhibitor resistance
+rno01522	Endocrine resistance
+rno01523	Antifolate resistance
+rno01524	Platinum drug resistance
+rno02010	ABC transporters
+rno03008	Ribosome biogenesis in eukaryotes
+rno03010	Ribosome
+rno03013	RNA transport
+rno03015	mRNA surveillance pathway
+rno03018	RNA degradation
+rno03020	RNA polymerase
+rno03022	Basal transcription factors
+rno03030	DNA replication
+rno03040	Spliceosome
+rno03050	Proteasome
+rno03060	Protein export
+rno03320	PPAR signaling pathway
+rno03410	Base excision repair
+rno03420	Nucleotide excision repair
+rno03430	Mismatch repair
+rno03440	Homologous recombination
+rno03450	Non-homologous end-joining
+rno03460	Fanconi anemia pathway
+rno04010	MAPK signaling pathway
+rno04012	ErbB signaling pathway
+rno04014	Ras signaling pathway
+rno04015	Rap1 signaling pathway
+rno04020	Calcium signaling pathway
+rno04022	cGMP-PKG signaling pathway
+rno04024	cAMP signaling pathway
+rno04060	Cytokine-cytokine receptor interaction
+rno04062	Chemokine signaling pathway
+rno04064	NF-kappa B signaling pathway
+rno04066	HIF-1 signaling pathway
+rno04068	FoxO signaling pathway
+rno04070	Phosphatidylinositol signaling system
+rno04071	Sphingolipid signaling pathway
+rno04072	Phospholipase D signaling pathway
+rno04080	Neuroactive ligand-receptor interaction
+rno04110	Cell cycle
+rno04114	Oocyte meiosis
+rno04115	p53 signaling pathway
+rno04120	Ubiquitin mediated proteolysis
+rno04122	Sulfur relay system
+rno04130	SNARE interactions in vesicular transport
+rno04136	Autophagy
+rno04137	Mitophagy
+rno04140	Autophagy
+rno04141	Protein processing in endoplasmic reticulum
+rno04142	Lysosome
+rno04144	Endocytosis
+rno04145	Phagosome
+rno04146	Peroxisome
+rno04150	mTOR signaling pathway
+rno04151	PI3K-Akt signaling pathway
+rno04152	AMPK signaling pathway
+rno04210	Apoptosis
+rno04211	Longevity regulating pathway
+rno04213	Longevity regulating pathway
+rno04215	Apoptosis
+rno04216	Ferroptosis
+rno04217	Necroptosis
+rno04218	Cellular senescence
+rno04260	Cardiac muscle contraction
+rno04261	Adrenergic signaling in cardiomyocytes
+rno04270	Vascular smooth muscle contraction
+rno04310	Wnt signaling pathway
+rno04330	Notch signaling pathway
+rno04340	Hedgehog signaling pathway
+rno04350	TGF-beta signaling pathway
+rno04360	Axon guidance
+rno04370	VEGF signaling pathway
+rno04371	Apelin signaling pathway
+rno04380	Osteoclast differentiation
+rno04390	Hippo signaling pathway
+rno04392	Hippo signaling pathway
+rno04510	Focal adhesion
+rno04512	ECM-receptor interaction
+rno04514	Cell adhesion molecules (CAMs)
+rno04520	Adherens junction
+rno04530	Tight junction
+rno04540	Gap junction
+rno04550	Signaling pathways regulating pluripotency of stem cells
+rno04610	Complement and coagulation cascades
+rno04611	Platelet activation
+rno04612	Antigen processing and presentation
+rno04614	Renin-angiotensin system
+rno04620	Toll-like receptor signaling pathway
+rno04621	NOD-like receptor signaling pathway
+rno04622	RIG-I-like receptor signaling pathway
+rno04623	Cytosolic DNA-sensing pathway
+rno04625	C-type lectin receptor signaling pathway
+rno04630	JAK-STAT signaling pathway
+rno04640	Hematopoietic cell lineage
+rno04650	Natural killer cell mediated cytotoxicity
+rno04657	IL-17 signaling pathway
+rno04658	Th1 and Th2 cell differentiation
+rno04659	Th17 cell differentiation
+rno04660	T cell receptor signaling pathway
+rno04662	B cell receptor signaling pathway
+rno04664	Fc epsilon RI signaling pathway
+rno04666	Fc gamma R-mediated phagocytosis
+rno04668	TNF signaling pathway
+rno04670	Leukocyte transendothelial migration
+rno04672	Intestinal immune network for IgA production
+rno04710	Circadian rhythm
+rno04713	Circadian entrainment
+rno04714	Thermogenesis
+rno04720	Long-term potentiation
+rno04721	Synaptic vesicle cycle
+rno04722	Neurotrophin signaling pathway
+rno04723	Retrograde endocannabinoid signaling
+rno04724	Glutamatergic synapse
+rno04725	Cholinergic synapse
+rno04726	Serotonergic synapse
+rno04727	GABAergic synapse
+rno04728	Dopaminergic synapse
+rno04730	Long-term depression
+rno04740	Olfactory transduction
+rno04742	Taste transduction
+rno04744	Phototransduction
+rno04750	Inflammatory mediator regulation of TRP channels
+rno04810	Regulation of actin cytoskeleton
+rno04910	Insulin signaling pathway
+rno04911	Insulin secretion
+rno04912	GnRH signaling pathway
+rno04913	Ovarian steroidogenesis
+rno04914	Progesterone-mediated oocyte maturation
+rno04915	Estrogen signaling pathway
+rno04916	Melanogenesis
+rno04917	Prolactin signaling pathway
+rno04918	Thyroid hormone synthesis
+rno04919	Thyroid hormone signaling pathway
+rno04920	Adipocytokine signaling pathway
+rno04921	Oxytocin signaling pathway
+rno04922	Glucagon signaling pathway
+rno04923	Regulation of lipolysis in adipocytes
+rno04924	Renin secretion
+rno04925	Aldosterone synthesis and secretion
+rno04926	Relaxin signaling pathway
+rno04927	Cortisol synthesis and secretion
+rno04928	Parathyroid hormone synthesis, secretion and action
+rno04930	Type II diabetes mellitus
+rno04931	Insulin resistance
+rno04932	Non-alcoholic fatty liver disease (NAFLD)
+rno04933	AGE-RAGE signaling pathway in diabetic complications
+rno04934	Cushing syndrome
+rno04940	Type I diabetes mellitus
+rno04950	Maturity onset diabetes of the young
+rno04960	Aldosterone-regulated sodium reabsorption
+rno04961	Endocrine and other factor-regulated calcium reabsorption
+rno04962	Vasopressin-regulated water reabsorption
+rno04964	Proximal tubule bicarbonate reclamation
+rno04966	Collecting duct acid secretion
+rno04970	Salivary secretion
+rno04971	Gastric acid secretion
+rno04972	Pancreatic secretion
+rno04973	Carbohydrate digestion and absorption
+rno04974	Protein digestion and absorption
+rno04975	Fat digestion and absorption
+rno04976	Bile secretion
+rno04977	Vitamin digestion and absorption
+rno04978	Mineral absorption
+rno04979	Cholesterol metabolism
+rno05010	Alzheimer disease
+rno05012	Parkinson disease
+rno05014	Amyotrophic lateral sclerosis (ALS)
+rno05016	Huntington disease
+rno05020	Prion diseases
+rno05030	Cocaine addiction
+rno05031	Amphetamine addiction
+rno05032	Morphine addiction
+rno05033	Nicotine addiction
+rno05034	Alcoholism
+rno05100	Bacterial invasion of epithelial cells
+rno05132	Salmonella infection
+rno05133	Pertussis
+rno05134	Legionellosis
+rno05140	Leishmaniasis
+rno05142	Chagas disease (American trypanosomiasis)
+rno05143	African trypanosomiasis
+rno05144	Malaria
+rno05145	Toxoplasmosis
+rno05146	Amoebiasis
+rno05150	Staphylococcus aureus infection
+rno05152	Tuberculosis
+rno05160	Hepatitis C
+rno05161	Hepatitis B
+rno05162	Measles
+rno05163	Human cytomegalovirus infection
+rno05164	Influenza A
+rno05165	Human papillomavirus infection
+rno05166	Human T-cell leukemia virus 1 infection
+rno05167	Kaposi sarcoma-associated herpesvirus infection
+rno05168	Herpes simplex infection
+rno05169	Epstein-Barr virus infection
+rno05170	Human immunodeficiency virus 1 infection
+rno05200	Pathways in cancer
+rno05202	Transcriptional misregulation in cancer
+rno05203	Viral carcinogenesis
+rno05204	Chemical carcinogenesis
+rno05205	Proteoglycans in cancer
+rno05206	MicroRNAs in cancer
+rno05210	Colorectal cancer
+rno05211	Renal cell carcinoma
+rno05212	Pancreatic cancer
+rno05213	Endometrial cancer
+rno05214	Glioma
+rno05215	Prostate cancer
+rno05216	Thyroid cancer
+rno05217	Basal cell carcinoma
+rno05218	Melanoma
+rno05219	Bladder cancer
+rno05220	Chronic myeloid leukemia
+rno05221	Acute myeloid leukemia
+rno05222	Small cell lung cancer
+rno05223	Non-small cell lung cancer
+rno05224	Breast cancer
+rno05225	Hepatocellular carcinoma
+rno05226	Gastric cancer
+rno05230	Central carbon metabolism in cancer
+rno05231	Choline metabolism in cancer
+rno05310	Asthma
+rno05320	Autoimmune thyroid disease
+rno05321	Inflammatory bowel disease (IBD)
+rno05322	Systemic lupus erythematosus
+rno05323	Rheumatoid arthritis
+rno05330	Allograft rejection
+rno05332	Graft-versus-host disease
+rno05340	Primary immunodeficiency
+rno05410	Hypertrophic cardiomyopathy (HCM)
+rno05412	Arrhythmogenic right ventricular cardiomyopathy (ARVC)
+rno05414	Dilated cardiomyopathy (DCM)
+rno05416	Viral myocarditis
+rno05418	Fluid shear stress and atherosclerosis