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annotate tool-data/rno_pathways.loc @ 0:9845dc9c7323 draft

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planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
author proteore
date Tue, 18 Dec 2018 10:02:54 -0500
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9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
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1 rno00010 Glycolysis / Gluconeogenesis
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2 rno00020 Citrate cycle (TCA cycle)
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3 rno00030 Pentose phosphate pathway
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4 rno00040 Pentose and glucuronate interconversions
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5 rno00051 Fructose and mannose metabolism
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6 rno00052 Galactose metabolism
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7 rno00053 Ascorbate and aldarate metabolism
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8 rno00061 Fatty acid biosynthesis
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9 rno00062 Fatty acid elongation
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10 rno00071 Fatty acid degradation
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11 rno00072 Synthesis and degradation of ketone bodies
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12 rno00100 Steroid biosynthesis
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13 rno00120 Primary bile acid biosynthesis
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14 rno00130 Ubiquinone and other terpenoid-quinone biosynthesis
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15 rno00140 Steroid hormone biosynthesis
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16 rno00190 Oxidative phosphorylation
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17 rno00220 Arginine biosynthesis
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18 rno00230 Purine metabolism
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19 rno00232 Caffeine metabolism
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20 rno00240 Pyrimidine metabolism
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21 rno00250 Alanine, aspartate and glutamate metabolism
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22 rno00260 Glycine, serine and threonine metabolism
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23 rno00270 Cysteine and methionine metabolism
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24 rno00280 Valine, leucine and isoleucine degradation
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25 rno00290 Valine, leucine and isoleucine biosynthesis
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26 rno00310 Lysine degradation
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27 rno00330 Arginine and proline metabolism
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28 rno00340 Histidine metabolism
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29 rno00350 Tyrosine metabolism
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30 rno00360 Phenylalanine metabolism
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31 rno00380 Tryptophan metabolism
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32 rno00400 Phenylalanine, tyrosine and tryptophan biosynthesis
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33 rno00410 beta-Alanine metabolism
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34 rno00430 Taurine and hypotaurine metabolism
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35 rno00440 Phosphonate and phosphinate metabolism
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36 rno00450 Selenocompound metabolism
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37 rno00471 D-Glutamine and D-glutamate metabolism
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38 rno00472 D-Arginine and D-ornithine metabolism
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39 rno00480 Glutathione metabolism
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40 rno00500 Starch and sucrose metabolism
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41 rno00510 N-Glycan biosynthesis
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42 rno00511 Other glycan degradation
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43 rno00512 Mucin type O-glycan biosynthesis
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44 rno00514 Other types of O-glycan biosynthesis
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45 rno00515 Mannose type O-glycan biosynthesis
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46 rno00520 Amino sugar and nucleotide sugar metabolism
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47 rno00524 Neomycin, kanamycin and gentamicin biosynthesis
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48 rno00531 Glycosaminoglycan degradation
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49 rno00532 Glycosaminoglycan biosynthesis
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50 rno00533 Glycosaminoglycan biosynthesis
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51 rno00534 Glycosaminoglycan biosynthesis
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52 rno00561 Glycerolipid metabolism
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53 rno00562 Inositol phosphate metabolism
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54 rno00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
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55 rno00564 Glycerophospholipid metabolism
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56 rno00565 Ether lipid metabolism
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57 rno00590 Arachidonic acid metabolism
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58 rno00591 Linoleic acid metabolism
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59 rno00592 alpha-Linolenic acid metabolism
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60 rno00600 Sphingolipid metabolism
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61 rno00601 Glycosphingolipid biosynthesis
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62 rno00603 Glycosphingolipid biosynthesis
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63 rno00604 Glycosphingolipid biosynthesis
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64 rno00620 Pyruvate metabolism
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65 rno00630 Glyoxylate and dicarboxylate metabolism
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66 rno00640 Propanoate metabolism
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67 rno00650 Butanoate metabolism
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68 rno00670 One carbon pool by folate
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69 rno00730 Thiamine metabolism
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70 rno00740 Riboflavin metabolism
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71 rno00750 Vitamin B6 metabolism
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72 rno00760 Nicotinate and nicotinamide metabolism
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73 rno00770 Pantothenate and CoA biosynthesis
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74 rno00780 Biotin metabolism
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75 rno00785 Lipoic acid metabolism
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76 rno00790 Folate biosynthesis
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77 rno00830 Retinol metabolism
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78 rno00860 Porphyrin and chlorophyll metabolism
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79 rno00900 Terpenoid backbone biosynthesis
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80 rno00910 Nitrogen metabolism
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81 rno00920 Sulfur metabolism
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82 rno00970 Aminoacyl-tRNA biosynthesis
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83 rno00980 Metabolism of xenobiotics by cytochrome P450
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84 rno00982 Drug metabolism
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85 rno00983 Drug metabolism
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86 rno01040 Biosynthesis of unsaturated fatty acids
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87 rno01100 Metabolic pathways
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88 rno01200 Carbon metabolism
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89 rno01210 2-Oxocarboxylic acid metabolism
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90 rno01212 Fatty acid metabolism
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91 rno01230 Biosynthesis of amino acids
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92 rno01521 EGFR tyrosine kinase inhibitor resistance
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93 rno01522 Endocrine resistance
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94 rno01523 Antifolate resistance
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95 rno01524 Platinum drug resistance
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96 rno02010 ABC transporters
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97 rno03008 Ribosome biogenesis in eukaryotes
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98 rno03010 Ribosome
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99 rno03013 RNA transport
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100 rno03015 mRNA surveillance pathway
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101 rno03018 RNA degradation
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102 rno03020 RNA polymerase
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103 rno03022 Basal transcription factors
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104 rno03030 DNA replication
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105 rno03040 Spliceosome
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106 rno03050 Proteasome
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107 rno03060 Protein export
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108 rno03320 PPAR signaling pathway
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109 rno03410 Base excision repair
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110 rno03420 Nucleotide excision repair
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111 rno03430 Mismatch repair
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112 rno03440 Homologous recombination
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113 rno03450 Non-homologous end-joining
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114 rno03460 Fanconi anemia pathway
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115 rno04010 MAPK signaling pathway
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116 rno04012 ErbB signaling pathway
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117 rno04014 Ras signaling pathway
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118 rno04015 Rap1 signaling pathway
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119 rno04020 Calcium signaling pathway
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proteore
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120 rno04022 cGMP-PKG signaling pathway
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proteore
parents:
diff changeset
121 rno04024 cAMP signaling pathway
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proteore
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122 rno04060 Cytokine-cytokine receptor interaction
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proteore
parents:
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123 rno04062 Chemokine signaling pathway
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proteore
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124 rno04064 NF-kappa B signaling pathway
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125 rno04066 HIF-1 signaling pathway
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parents:
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126 rno04068 FoxO signaling pathway
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proteore
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127 rno04070 Phosphatidylinositol signaling system
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proteore
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128 rno04071 Sphingolipid signaling pathway
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proteore
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129 rno04072 Phospholipase D signaling pathway
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proteore
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130 rno04080 Neuroactive ligand-receptor interaction
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proteore
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131 rno04110 Cell cycle
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proteore
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132 rno04114 Oocyte meiosis
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proteore
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133 rno04115 p53 signaling pathway
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proteore
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134 rno04120 Ubiquitin mediated proteolysis
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proteore
parents:
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135 rno04122 Sulfur relay system
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proteore
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136 rno04130 SNARE interactions in vesicular transport
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proteore
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137 rno04136 Autophagy
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proteore
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138 rno04137 Mitophagy
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proteore
parents:
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139 rno04140 Autophagy
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proteore
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140 rno04141 Protein processing in endoplasmic reticulum
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141 rno04142 Lysosome
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proteore
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142 rno04144 Endocytosis
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proteore
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143 rno04145 Phagosome
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parents:
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144 rno04146 Peroxisome
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proteore
parents:
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145 rno04150 mTOR signaling pathway
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146 rno04151 PI3K-Akt signaling pathway
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147 rno04152 AMPK signaling pathway
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148 rno04210 Apoptosis
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proteore
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149 rno04211 Longevity regulating pathway
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proteore
parents:
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150 rno04213 Longevity regulating pathway
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proteore
parents:
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151 rno04215 Apoptosis
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proteore
parents:
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152 rno04216 Ferroptosis
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proteore
parents:
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153 rno04217 Necroptosis
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proteore
parents:
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154 rno04218 Cellular senescence
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proteore
parents:
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155 rno04260 Cardiac muscle contraction
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proteore
parents:
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156 rno04261 Adrenergic signaling in cardiomyocytes
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proteore
parents:
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157 rno04270 Vascular smooth muscle contraction
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proteore
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158 rno04310 Wnt signaling pathway
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proteore
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159 rno04330 Notch signaling pathway
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proteore
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160 rno04340 Hedgehog signaling pathway
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proteore
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161 rno04350 TGF-beta signaling pathway
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proteore
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162 rno04360 Axon guidance
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proteore
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163 rno04370 VEGF signaling pathway
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proteore
parents:
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164 rno04371 Apelin signaling pathway
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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165 rno04380 Osteoclast differentiation
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proteore
parents:
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166 rno04390 Hippo signaling pathway
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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167 rno04392 Hippo signaling pathway
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proteore
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168 rno04510 Focal adhesion
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proteore
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169 rno04512 ECM-receptor interaction
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proteore
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170 rno04514 Cell adhesion molecules (CAMs)
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proteore
parents:
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171 rno04520 Adherens junction
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proteore
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172 rno04530 Tight junction
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proteore
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173 rno04540 Gap junction
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proteore
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174 rno04550 Signaling pathways regulating pluripotency of stem cells
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proteore
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175 rno04610 Complement and coagulation cascades
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
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176 rno04611 Platelet activation
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proteore
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177 rno04612 Antigen processing and presentation
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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178 rno04614 Renin-angiotensin system
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proteore
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179 rno04620 Toll-like receptor signaling pathway
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proteore
parents:
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180 rno04621 NOD-like receptor signaling pathway
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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181 rno04622 RIG-I-like receptor signaling pathway
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proteore
parents:
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182 rno04623 Cytosolic DNA-sensing pathway
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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183 rno04625 C-type lectin receptor signaling pathway
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proteore
parents:
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184 rno04630 JAK-STAT signaling pathway
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proteore
parents:
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185 rno04640 Hematopoietic cell lineage
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proteore
parents:
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186 rno04650 Natural killer cell mediated cytotoxicity
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proteore
parents:
diff changeset
187 rno04657 IL-17 signaling pathway
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
diff changeset
188 rno04658 Th1 and Th2 cell differentiation
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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189 rno04659 Th17 cell differentiation
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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190 rno04660 T cell receptor signaling pathway
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proteore
parents:
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191 rno04662 B cell receptor signaling pathway
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proteore
parents:
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192 rno04664 Fc epsilon RI signaling pathway
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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193 rno04666 Fc gamma R-mediated phagocytosis
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proteore
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194 rno04668 TNF signaling pathway
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proteore
parents:
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195 rno04670 Leukocyte transendothelial migration
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proteore
parents:
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196 rno04672 Intestinal immune network for IgA production
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proteore
parents:
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197 rno04710 Circadian rhythm
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proteore
parents:
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198 rno04713 Circadian entrainment
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proteore
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199 rno04714 Thermogenesis
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proteore
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200 rno04720 Long-term potentiation
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proteore
parents:
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201 rno04721 Synaptic vesicle cycle
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proteore
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202 rno04722 Neurotrophin signaling pathway
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
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203 rno04723 Retrograde endocannabinoid signaling
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proteore
parents:
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204 rno04724 Glutamatergic synapse
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proteore
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205 rno04725 Cholinergic synapse
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proteore
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206 rno04726 Serotonergic synapse
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proteore
parents:
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207 rno04727 GABAergic synapse
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208 rno04728 Dopaminergic synapse
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proteore
parents:
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209 rno04730 Long-term depression
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210 rno04740 Olfactory transduction
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211 rno04742 Taste transduction
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proteore
parents:
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212 rno04744 Phototransduction
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213 rno04750 Inflammatory mediator regulation of TRP channels
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parents:
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214 rno04810 Regulation of actin cytoskeleton
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proteore
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215 rno04910 Insulin signaling pathway
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216 rno04911 Insulin secretion
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217 rno04912 GnRH signaling pathway
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218 rno04913 Ovarian steroidogenesis
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219 rno04914 Progesterone-mediated oocyte maturation
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proteore
parents:
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220 rno04915 Estrogen signaling pathway
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proteore
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221 rno04916 Melanogenesis
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222 rno04917 Prolactin signaling pathway
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proteore
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223 rno04918 Thyroid hormone synthesis
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proteore
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224 rno04919 Thyroid hormone signaling pathway
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225 rno04920 Adipocytokine signaling pathway
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226 rno04921 Oxytocin signaling pathway
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227 rno04922 Glucagon signaling pathway
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parents:
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228 rno04923 Regulation of lipolysis in adipocytes
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229 rno04924 Renin secretion
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230 rno04925 Aldosterone synthesis and secretion
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231 rno04926 Relaxin signaling pathway
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232 rno04927 Cortisol synthesis and secretion
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233 rno04928 Parathyroid hormone synthesis, secretion and action
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234 rno04930 Type II diabetes mellitus
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235 rno04931 Insulin resistance
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proteore
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236 rno04932 Non-alcoholic fatty liver disease (NAFLD)
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parents:
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237 rno04933 AGE-RAGE signaling pathway in diabetic complications
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238 rno04934 Cushing syndrome
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239 rno04940 Type I diabetes mellitus
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240 rno04950 Maturity onset diabetes of the young
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241 rno04960 Aldosterone-regulated sodium reabsorption
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242 rno04961 Endocrine and other factor-regulated calcium reabsorption
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parents:
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243 rno04962 Vasopressin-regulated water reabsorption
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parents:
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244 rno04964 Proximal tubule bicarbonate reclamation
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parents:
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245 rno04966 Collecting duct acid secretion
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parents:
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246 rno04970 Salivary secretion
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parents:
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247 rno04971 Gastric acid secretion
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parents:
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248 rno04972 Pancreatic secretion
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parents:
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249 rno04973 Carbohydrate digestion and absorption
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parents:
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250 rno04974 Protein digestion and absorption
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parents:
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251 rno04975 Fat digestion and absorption
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parents:
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252 rno04976 Bile secretion
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parents:
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253 rno04977 Vitamin digestion and absorption
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proteore
parents:
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254 rno04978 Mineral absorption
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
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parents:
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255 rno04979 Cholesterol metabolism
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
diff changeset
256 rno05010 Alzheimer disease
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
diff changeset
257 rno05012 Parkinson disease
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
diff changeset
258 rno05014 Amyotrophic lateral sclerosis (ALS)
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
diff changeset
259 rno05016 Huntington disease
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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260 rno05020 Prion diseases
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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261 rno05030 Cocaine addiction
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proteore
parents:
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262 rno05031 Amphetamine addiction
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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263 rno05032 Morphine addiction
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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264 rno05033 Nicotine addiction
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
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parents:
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265 rno05034 Alcoholism
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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266 rno05100 Bacterial invasion of epithelial cells
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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267 rno05132 Salmonella infection
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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268 rno05133 Pertussis
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proteore
parents:
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269 rno05134 Legionellosis
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proteore
parents:
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270 rno05140 Leishmaniasis
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proteore
parents:
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271 rno05142 Chagas disease (American trypanosomiasis)
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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272 rno05143 African trypanosomiasis
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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273 rno05144 Malaria
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proteore
parents:
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274 rno05145 Toxoplasmosis
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proteore
parents:
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275 rno05146 Amoebiasis
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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276 rno05150 Staphylococcus aureus infection
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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277 rno05152 Tuberculosis
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proteore
parents:
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278 rno05160 Hepatitis C
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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279 rno05161 Hepatitis B
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proteore
parents:
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280 rno05162 Measles
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proteore
parents:
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281 rno05163 Human cytomegalovirus infection
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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282 rno05164 Influenza A
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proteore
parents:
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283 rno05165 Human papillomavirus infection
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proteore
parents:
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284 rno05166 Human T-cell leukemia virus 1 infection
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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285 rno05167 Kaposi sarcoma-associated herpesvirus infection
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proteore
parents:
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286 rno05168 Herpes simplex infection
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proteore
parents:
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287 rno05169 Epstein-Barr virus infection
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proteore
parents:
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288 rno05170 Human immunodeficiency virus 1 infection
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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289 rno05200 Pathways in cancer
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parents:
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290 rno05202 Transcriptional misregulation in cancer
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parents:
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291 rno05203 Viral carcinogenesis
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292 rno05204 Chemical carcinogenesis
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parents:
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293 rno05205 Proteoglycans in cancer
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proteore
parents:
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294 rno05206 MicroRNAs in cancer
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parents:
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295 rno05210 Colorectal cancer
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parents:
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296 rno05211 Renal cell carcinoma
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297 rno05212 Pancreatic cancer
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298 rno05213 Endometrial cancer
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299 rno05214 Glioma
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parents:
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300 rno05215 Prostate cancer
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
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301 rno05216 Thyroid cancer
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parents:
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302 rno05217 Basal cell carcinoma
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parents:
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303 rno05218 Melanoma
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parents:
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304 rno05219 Bladder cancer
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parents:
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305 rno05220 Chronic myeloid leukemia
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parents:
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306 rno05221 Acute myeloid leukemia
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parents:
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307 rno05222 Small cell lung cancer
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
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parents:
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308 rno05223 Non-small cell lung cancer
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parents:
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309 rno05224 Breast cancer
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
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parents:
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310 rno05225 Hepatocellular carcinoma
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
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311 rno05226 Gastric cancer
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312 rno05230 Central carbon metabolism in cancer
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313 rno05231 Choline metabolism in cancer
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parents:
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314 rno05310 Asthma
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proteore
parents:
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315 rno05320 Autoimmune thyroid disease
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parents:
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316 rno05321 Inflammatory bowel disease (IBD)
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parents:
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317 rno05322 Systemic lupus erythematosus
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parents:
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318 rno05323 Rheumatoid arthritis
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319 rno05330 Allograft rejection
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parents:
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320 rno05332 Graft-versus-host disease
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parents:
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321 rno05340 Primary immunodeficiency
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parents:
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322 rno05410 Hypertrophic cardiomyopathy (HCM)
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parents:
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323 rno05412 Arrhythmogenic right ventricular cardiomyopathy (ARVC)
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proteore
parents:
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324 rno05414 Dilated cardiomyopathy (DCM)
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parents:
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325 rno05416 Viral myocarditis
9845dc9c7323 planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
proteore
parents:
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326 rno05418 Fluid shear stress and atherosclerosis