Mercurial > repos > proteore > proteore_prot_features
comparison README.rst @ 1:bfc679370c64 draft
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author | proteore |
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date | Fri, 16 Feb 2018 04:06:16 -0500 |
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1 Wrapper for Protein Features tool | |
2 ========================= | |
3 | |
4 **Authors** | |
5 | |
6 T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR | |
7 | |
8 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform | |
9 | |
10 This work has been partially funded through the French National Agency for Research (ANR) IFB project. | |
11 | |
12 Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool. | |
13 | |
14 ========================= | |
15 | |
16 This tool add annotation (protein features) from neXtProt database (knowledge base on human proteins) to your protein IDs list. | |
17 | |
18 **Input** | |
19 | |
20 Input can be a file containing multiple fields but with **at least one column of Uniprot accession number or neXtProt IDs**. If your input file contains other type of IDs, please use the ID_Converter tool. | |
21 | |
22 **Databases** | |
23 | |
24 Annotations have been retrieved from the neXtProt database (Gaudet et al., 2017) via a REST API (https://academic.oup.com/nar/article/43/D1/D764/2439066#40348985) | |
25 | |
26 **Outputs** | |
27 | |
28 The output is a tabular file. The initial columns are kept and columns are be added according to which annotation you have selected. |