Mercurial > repos > proteore > proteore_prot_features
view README.rst @ 10:4de4f6359820 draft
planemo upload commit 9af2cf12c26c94e7206751ccf101a3368f92d0ba
author | proteore |
---|---|
date | Tue, 18 Dec 2018 09:13:47 -0500 |
parents | 0b46a7aead62 |
children |
line wrap: on
line source
Wrapper for Protein Features tool ================================= **Authors** Lisa Peru, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform This work has been partially funded through the French National Agency for Research (ANR) IFB project. Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool. --------------------------------- This tool add annotation (protein features) from neXtProt database (knowledge base on human proteins) to your protein IDs list. **Input** Input can be a file containing multiple fields but with **at least one column of Uniprot accession number or neXtProt IDs**. If your input file contains other type of IDs, please use the ID_Converter tool. **Databases** Annotations have been retrieved from the neXtProt released on 21/02/2018 using the latest data from peptideAtlas (release Human 2018-1) using a REST API (https://academic.oup.com/nar/article/43/D1/D764/2439066#40348985) (Gaudet et al., 2017) **Outputs** The output is a tabular file. The initial columns are kept and columns are be added according to which annotation you have selected.