comparison topGO.xml @ 1:6788a57c5cb5 draft

planemo upload commit 5774fd6a5a746f36f6bf4671a51a39ea2b978300-dirty

0:472ad7da3d92

   </outputs>
   <tests>
     <test>
       <conditional name="inputtype">
         <param name="filetype " value="tabfile"/>
         <param name="genelist" value="prot_reactome_EGFR_mapped_ensg.txt"/>
         <param name="column" value="c1"/>
         <param name="header" value="FALSE"/>
       </conditional>
       <param name="ontocat" value="BP"/>
       <param name="option" value="elim"/>
       <param name="threshold" value="1e-3"/>
       <param name="correction" value="BH"/> 

       </conditional>
       <conditional name="conddot">
         <param name="dotoutput" value="TRUE"/>
       </conditional>
       <param name="geneuniverse" value="org.Hs.eg.db"/>
       <output name="outputtext" file="Text_output_for_topGO_analysis.txt"/>
       <output name="outputbarplot" file="Barplot_output_for_topGO_analysis.png"/>
       <output name="outputdotplot" file="Dotplot_output_for_topGO_analysis.png"/>
     </test>
   </tests>
   <help><![CDATA[
      
      

1:6788a57c5cb5

   </outputs>
   <tests>
     <test>
       <conditional name="inputtype">
         <param name="filetype " value="tabfile"/>
         <param name="genelist" value="ID_Converter_FKW_Lacombe_et_al_2017_OK.txt"/>
         <param name="column" value="c8"/>
         <param name="header" value="TRUE"/>
       </conditional>
       <param name="ontocat" value="BP"/>
       <param name="option" value="elim"/>
       <param name="threshold" value="1e-3"/>
       <param name="correction" value="BH"/> 

       </conditional>
       <conditional name="conddot">
         <param name="dotoutput" value="TRUE"/>
       </conditional>
       <param name="geneuniverse" value="org.Hs.eg.db"/>
       <output name="outputtext" file="Text_output_for_topGO_analysis_BP_category.tabular"/>
       <output name="outputbarplot" file="Barplot_output_for_topGO_analysis_BP_category.png"/>
       <output name="outputdotplot" file="Dotplot_output_for_topGO_analysis_BP_category.png"/>
     </test>
   </tests>
   <help><![CDATA[