Mercurial > repos > pstew > escape_excel

changeset 2:482c23a5abfe draft default tip

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Uploaded Python wrapper
author pstew
date Fri, 17 Feb 2017 16:38:30 -0500
parents 7726adcf91c6
children
files escape_excel_wrapper.py
diffstat 1 files changed, 23 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/escape_excel_wrapper.py	Fri Feb 17 16:38:30 2017 -0500
@@ -0,0 +1,23 @@
+import os 
+import sys
+
+paranoid = sys.argv[1]
+escape_dates = sys.argv[2]
+escape_scinot = sys.argv[3]
+escape_leadzero = sys.argv[4]
+input_file = sys.argv[5]
+output_file = sys.argv[6]
+
+cmd = 'perl /home/bornea/galaxy-apostl-docker/tools/escapeExcel/escape_excel.pl'
+if paranoid == 'TRUE':
+	cmd = cmd + ' --paranoid'
+if escape_dates == 'TRUE':
+	cmd = cmd + ' --no-dates'
+if escape_scinot == 'TRUE':
+	cmd = cmd + ' --no-sci'
+if escape_leadzero== 'TRUE':
+	cmd = cmd + ' --no-zeroes'
+
+cmd = cmd + ' ' + input_file + ' ' + output_file
+
+os.system(cmd)