Mercurial > repos > public-health-bioinformatics > linelisting
comparison test-data/fluA_H3_clade_assigned_antigenic_sites_extracted.fasta @ 0:be856549e863 draft default tip
planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit b96b6e06f6eaa6ae8ef4c24630dbb72a4aed7dbe
| author | public-health-bioinformatics |
|---|---|
| date | Thu, 04 Jul 2019 19:37:41 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:be856549e863 |
|---|---|
| 1 >A-ON-314-2017_3C.3a | |
| 2 QNSSIEIDSQLENIQGQNKKLFVNKYNVPRTNNSNAGVTQNTSSIGSKSSRNTHLNSKAL | |
| 3 NTMNNEQFDKLIVGTDKDISLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF | |
| 4 VRIACRYVKQS | |
| 5 | |
| 6 >A-AB-399-2017_3C.2a_+_N31S_+_D53N_+_R142G_+_S144R_+_N171K_+_I192T_+_Q197H | |
| 7 QNSSIEINSQLENIQGQNKKLFVSKYNVPRTNNSNTGVTQNTSAIGSRSSRNTHLNYTAL | |
| 8 NTMNKEQFDKLIVGTDKDTFLAHSRTKRSAVIPNIGSIPSRIKGLLNSTIRSSPGKKSEF | |
| 9 VRIACRYVKHS | |
| 10 | |
| 11 >A-QC-303-2017_3C.2a_+_N31S_+_D53N_+_R142G_+_S144R_+_N171K_+_I192T_+_Q197H | |
| 12 QNSSIEINSQLENIQGQNKKLFVSKYNVPRTNNSNTGVTQNTSAIGSRSSRNTHLNYTAL | |
| 13 NTMNKEQFDKLIVGTDKDTFLAHSRTKRSAVIPNIGSIPSRIKGLLNSTIRSSPGKKSEF | |
| 14 VRIACRYVKHS | |
| 15 | |
| 16 >A-AB-319-2017_3C.2a_+_N31S_+_D53N_+_R142G_+_S144R_+_N171K_+_I192T_+_Q197H | |
| 17 QNSSIEINSQLENIQGQNKKLFVSKYNVPRTNNSNTGVTQNTSAIGSRSSRNTHLNYTAL | |
| 18 NTMNKEQFDKLIVGTDKDTFLAHSRTKRSAVIPNIGSIPSRIKGLLNSTIRSSPGKKSEF | |
| 19 VRIACRYVKHS | |
| 20 | |
| 21 >A-AB-308-2017_3C.2a1_+_N121K_+_T135K | |
| 22 QNSSIEIDSQLENIQDQNKKLFVSKHNVPRTKDSNTGVTQNKSAIRSSSSRNTHLNYTAL | |
| 23 NTMNKEQFDKLIIGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF | |
| 24 VRIACRYVKHS | |
| 25 | |
| 26 >A-AB-341-2017_3C.2a1_+_N121K_+_T135K | |
| 27 QNSSIEIDSQLENIQDQNKKLFVSKHNVPRTKDSNTGVTQNKSAIRSSSSRNTHLNYTAL | |
| 28 NTMNKEQFDKLIIGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF | |
| 29 VRIACRYVKHS | |
| 30 | |
| 31 >A-BC-024-2018_3C.2a1_+_N121K_+_T135K | |
| 32 QNSSIEIDSQLENIQDQNKKLFVSKHNVPRTKNSNTGVTQNKSAIRSSSSRNTHLNYTAL | |
| 33 NTMNKEQFDKLIIGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF | |
| 34 VRIACRYVKHS | |
| 35 | |
| 36 >A-QC-309-2017_3C.2a1_+_N121K_+_K92R_+_H311Q | |
| 37 QNSSIEIDSQLGNIQDQNKKLFVSRYNVPRTKDSNTGVTQNKSAIGSSSSRNTHLNYTAL | |
| 38 NTMNKEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF | |
| 39 VRIACRYVKQS | |
| 40 | |
| 41 >A-BC-324-2017_3C.2a1_+_N121K_+_K92R_+_H311Q | |
| 42 QNSSMEIDSQLGNIQGQNKKLFVSRYNVPRTKNSNTGVTQNKSAIGSSSSRNTHLNYTAL | |
| 43 NTMNKEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF | |
| 44 VRIACRYVKQS | |
| 45 | |
| 46 >A-QC-315-2017_3C.2a1_+_N121K_+_K92R_+_H311Q | |
| 47 QNSSIEIDSQLGNIQGQNKKLFVSRYNVPRTKNSNAGVTQNKSAIGSSSSRNTHLNYTAL | |
| 48 NTMNKEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF | |
| 49 VRIACRYVKQS | |
| 50 | |
| 51 >A-ON-016-2018_3C.2a_+_N121K_+_S144K | |
| 52 QNSSIEIDSQLENIQGQNKKLFVSKYNVPRTKNSNTGVTQNKSAIRSKSSKNTHLNYTAL | |
| 53 NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF | |
| 54 VRIACRYVKHS | |
| 55 | |
| 56 >A-BC-325-2017_3C.2a_+_N121K_+_S144K | |
| 57 QNSSIEIDSQLENIQGQNKKLFVSKYNVPRTKNSNTGVTQNKSAIRSKSSKNTHLNYTAL | |
| 58 NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF | |
| 59 VRIACRYVKHS | |
| 60 | |
| 61 >A-ON-003-2018_3C.2a_+_N121K_+_S144K | |
| 62 QNSSIEIDSQLENIQGQNKKLFVSKYNVPRTKNSNTGVTQNKSAIRSKSSKNTHLNYTAL | |
| 63 NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF | |
| 64 VRIACRYVKHS | |
| 65 | |
| 66 >A-ON-309-2017_No_Match | |
| 67 QNSSIEIDSQLENIQGQNKKLFVSKYNVPRTNNSNTGVKQNTSAIKSSSSRNTHLNYKAL | |
| 68 NTMNNEQFDKLIVGTDKDIFLAQSKTKISAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF | |
| 69 VRIACRYVKHS | |
| 70 | |
| 71 >A-BC-330-2017_No_Match | |
| 72 QNSSIEIDSQLENIQGQNKKLFVSKYNVPRTNNSNTGVKQNTSAIKSRSSRNTHLNYTAL | |
| 73 NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF | |
| 74 VRIACRYVKHS | |
| 75 | |
| 76 >A-AB-415-2017_3C.2a_+_T131K_+_R142K_+_R261Q | |
| 77 QNSSIEIDSQLENIQGQNKKLFVSRYNVPRTNNSNTGVKQNTSAIKSSSSRNTHLNYTAL | |
| 78 NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGFIPSRIKGILNSTIQSSPGKKSEF | |
| 79 VRIACRYVKHS | |
| 80 | |
| 81 >A-AB-400-2017_3C.2a_+_T131K_+_R142K_+_R261Q | |
| 82 QNSSIEIDSQLENIQGQNKKLFVSRYNVPRTNNSNTGVKQNTSAIKSSSSRNTHLNYTAL | |
| 83 NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF | |
| 84 VRIACRYVKHS | |
| 85 | |
| 86 >A-AB-416-2017_3C.2a_+_T131K_+_R142K_+_R261Q | |
| 87 QNSSIEIDSQLENIQGQNKKLFVSRYNVPRTNNSNTGVKQNTSAIKSSSSRNTHLNYTAL | |
| 88 NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF | |
| 89 VRIACRYVKHS | |
| 90 | |
| 91 >A-QC-316-2017_3C.2a_+_T131K_+_R142K_+_R261Q | |
| 92 QNSSIEIDSQLENIQGQNKKLFVSRYNVPRTNNSNTGVKQNTSAIKSSSSRNTHLNYTAL | |
| 93 NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF | |
| 94 VRIACRYVKHS |