Mercurial > repos > q2d2 > qiime2__boots__alpha_average
changeset 0:1621ff6b9f04 draft default tip
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b
| author | q2d2 |
|---|---|
| date | Sat, 01 Nov 2025 17:07:59 +0000 |
| parents | |
| children | |
| files | qiime2__boots__alpha_average.xml test-data/alpha.test0.table.qza test-data/alpha.test1.table.qza test-data/beta_collection.test0.table.qza test-data/beta_collection.test1.table.qza test-data/core_metrics.test0.metadata.tsv test-data/core_metrics.test0.table.qza test-data/core_metrics.test1.metadata.tsv test-data/core_metrics.test1.table.qza test-data/kmer_diversity.test0.metadata.tsv test-data/kmer_diversity.test0.sequences.qza test-data/kmer_diversity.test0.table.qza test-data/resample.test0.table.qza test-data/resample.test1.table.qza |
| diffstat | 14 files changed, 85 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2__boots__alpha_average.xml Sat Nov 01 17:07:59 2025 +0000 @@ -0,0 +1,67 @@ +<?xml version='1.0' encoding='utf-8'?> +<!-- +Copyright (c) 2025, QIIME 2 development team. + +Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) +--> +<!-- +This tool was automatically generated by: + q2galaxy (version: 2025.10.0) +for: + qiime2 (version: 2025.10.0) +--> +<tool name="qiime2 boots alpha-average" id="qiime2__boots__alpha_average" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause"> + <description>Average alpha diversity vectors.</description> + <xrefs> + <xref type="bio.tools">qiime2</xref> + </xrefs> + <requirements> + <container type="docker">quay.io/qiime2/amplicon:2025.10</container> + </requirements> + <version_command>q2galaxy version boots</version_command> + <command detect_errors="exit_code">q2galaxy run boots alpha_average '$inputs'</command> + <configfiles> + <inputs name="inputs" data_style="staging_path_and_source_path"/> + </configfiles> + <inputs> + <param name="data" type="data" format="qza" label="data: Collection[SampleData[AlphaDiversity]]" help="[required] Alpha diversity vectors to be averaged." multiple="true"> + <options options_filter_attribute="metadata.semantic_type"> + <filter type="add_value" value="SampleData[AlphaDiversity]"/> + </options> + </param> + <param name="average_method" type="select" label="average_method: Str % Choices('mean', 'median')" display="radio"> + <option value="__q2galaxy__::literal::None">Selection required</option> + <option value="mean">mean</option> + <option value="median">median</option> + <validator type="expression" message="Please verify this parameter.">value != '__q2galaxy__::literal::None'</validator> + </param> + </inputs> + <outputs> + <data name="average_alpha_diversity" format="qza" label="${tool.name} on ${on_string}: average_alpha_diversity.qza" from_work_dir="average_alpha_diversity.qza"/> + </outputs> + <tests/> + <help> +QIIME 2: boots alpha-average +============================ +Average alpha diversity vectors. + + +Outputs: +-------- +:average_alpha_diversity.qza: The average alpha diversity vector. + +| + +Description: +------------ +Compute the per-sample average across a collection of alpha diversity vectors computed from the same samples. + + +| + +</help> + <citations> + <citation type="doi">https://doi.org/10.12688/f1000research.156295.1</citation> + <citation type="doi">10.1038/s41587-019-0209-9</citation> + </citations> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/core_metrics.test0.metadata.tsv Sat Nov 01 17:07:59 2025 +0000 @@ -0,0 +1,6 @@ +sample-id even-or-odd +#q2:types categorical +S1 odd +S2 even +S3 odd +S4 even
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/core_metrics.test1.metadata.tsv Sat Nov 01 17:07:59 2025 +0000 @@ -0,0 +1,6 @@ +sample-id even-or-odd +#q2:types categorical +S1 odd +S2 even +S3 odd +S4 even