Mercurial > repos > q2d2 > qiime2__composition__ancom

changeset 2:e3a9e7cb7b77 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__composition commit 65e4952f33eb335528e8553150e9097e5ea8f556
author q2d2
date Thu, 08 Jun 2023 19:34:40 +0000
parents 4696fc685d83
children e3fdc3dc9fcc
files qiime2__composition__ancom.xml test-data/ancombc.test0.metadata.tsv test-data/ancombc.test0.table.qza test-data/ancombc.test1.metadata.tsv test-data/ancombc.test1.table.qza
diffstat 5 files changed, 13 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/qiime2__composition__ancom.xml	Fri Jan 13 22:05:02 2023 +0000
+++ b/qiime2__composition__ancom.xml	Thu Jun 08 19:34:40 2023 +0000
@@ -6,14 +6,14 @@
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2022.11.1)
+    q2galaxy (version: 2023.5.0)
 for:
-    qiime2 (version: 2022.11.1)
+    qiime2 (version: 2023.5.1)
 -->
-<tool name="qiime2 composition ancom" id="qiime2__composition__ancom" version="2022.11.2+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 composition ancom" id="qiime2__composition__ancom" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause">
     <description>Apply ANCOM to identify features that differ in abundance.</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2022.11</container>
+        <container type="docker">quay.io/qiime2/core:2023.5</container>
     </requirements>
     <version_command>q2galaxy version composition</version_command>
     <command detect_errors="exit_code">q2galaxy run composition ancom '$inputs'</command>
@@ -56,6 +56,7 @@
                 <option value="mean_difference">mean_difference</option>
                 <option value="f_statistic">f_statistic</option>
             </param>
+            <param name="filter_missing" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="filter_missing: Bool" help="[default: No]  If True, samples with missing metadata values will be filtered from the table prior to analysis. If False, an error will be raised if there are any missing metadata values."/>
         </section>
     </inputs>
     <outputs>
--- a/test-data/ancombc.test0.metadata.tsv	Fri Jan 13 22:05:02 2023 +0000
+++ b/test-data/ancombc.test0.metadata.tsv	Thu Jun 08 19:34:40 2023 +0000
@@ -1,5 +1,5 @@
 sample-id	barcode-sequence	bodysite	month	day	subject	animal	testcolumn	singlecolumn	AZcolumn
-#q2:types	categorical	categorical	numeric	numeric	categorical	categorical	categorical	categorical	categorical
+#q2:types	categorical	categorical	categorical	numeric	categorical	categorical	categorical	categorical	categorical
 L1S8	AGCTGACTAGTC	gut	10	28	subject-1	dog	test1	value	A
 L1S57	ACACACTATGGC	gut	1	20	subject-1	dog	test2	value	Z
 L1S76	ACTACGTGTGGT	gut	2	17	subject-1	cow	test1	value	Z
@@ -34,3 +34,6 @@
 L6S93	GCGTTACACACA	tongue	3	17	subject-2	dog	test1	value	Z
 L6S20	GAACTGTATCTC	tongue	4	14	subject-2	bird	test2	value	Z
 L6S68	CTGGACTCATAG	gut	10	28	subject-2	cow	test1	value	Z
+L6SD93	GCGTTACACACA	toe	3	17	subject-2	dog	test1	value	
+L6SD20	GAACTGTATCTC	toe	4	14	subject-2	bird	test2	value	
+L6SD68	CTGGACTCATAG	toe	10	28	subject-2	cow	test1	value	
Binary file test-data/ancombc.test0.table.qza has changed
--- a/test-data/ancombc.test1.metadata.tsv	Fri Jan 13 22:05:02 2023 +0000
+++ b/test-data/ancombc.test1.metadata.tsv	Thu Jun 08 19:34:40 2023 +0000
@@ -1,5 +1,5 @@
 sample-id	barcode-sequence	bodysite	month	day	subject	animal	testcolumn	singlecolumn	AZcolumn
-#q2:types	categorical	categorical	numeric	numeric	categorical	categorical	categorical	categorical	categorical
+#q2:types	categorical	categorical	categorical	numeric	categorical	categorical	categorical	categorical	categorical
 L1S8	AGCTGACTAGTC	gut	10	28	subject-1	dog	test1	value	A
 L1S57	ACACACTATGGC	gut	1	20	subject-1	dog	test2	value	Z
 L1S76	ACTACGTGTGGT	gut	2	17	subject-1	cow	test1	value	Z
@@ -34,3 +34,6 @@
 L6S93	GCGTTACACACA	tongue	3	17	subject-2	dog	test1	value	Z
 L6S20	GAACTGTATCTC	tongue	4	14	subject-2	bird	test2	value	Z
 L6S68	CTGGACTCATAG	gut	10	28	subject-2	cow	test1	value	Z
+L6SD93	GCGTTACACACA	toe	3	17	subject-2	dog	test1	value	
+L6SD20	GAACTGTATCTC	toe	4	14	subject-2	bird	test2	value	
+L6SD68	CTGGACTCATAG	toe	10	28	subject-2	cow	test1	value	
Binary file test-data/ancombc.test1.table.qza has changed