Mercurial > repos > q2d2 > qiime2__composition__ancombc
changeset 2:3bdf127442ed draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__composition commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
| author | q2d2 |
|---|---|
| date | Thu, 25 Apr 2024 20:53:16 +0000 |
| parents | fe99db171ce5 |
| children | 4b71e36cc3d2 |
| files | qiime2__composition__ancombc.xml test-data/ancombc.test0.table.qza test-data/ancombc.test1.table.qza |
| diffstat | 3 files changed, 6 insertions(+), 7 deletions(-) [+] |
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--- a/qiime2__composition__ancombc.xml Thu Jun 08 19:34:16 2023 +0000 +++ b/qiime2__composition__ancombc.xml Thu Apr 25 20:53:16 2024 +0000 @@ -1,24 +1,24 @@ <?xml version='1.0' encoding='utf-8'?> <!-- -Copyright (c) 2023, QIIME 2 development team. +Copyright (c) 2024, QIIME 2 development team. Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) --> <!-- This tool was automatically generated by: - q2galaxy (version: 2023.5.0) + q2galaxy (version: 2024.2.1) for: - qiime2 (version: 2023.5.1) + qiime2 (version: 2024.2.0) --> -<tool name="qiime2 composition ancombc" id="qiime2__composition__ancombc" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 composition ancombc" id="qiime2__composition__ancombc" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> <description>Analysis of Composition of Microbiomes with Bias Correction</description> <requirements> - <container type="docker">quay.io/qiime2/core:2023.5</container> + <container type="docker">quay.io/qiime2/amplicon:2024.2</container> </requirements> <version_command>q2galaxy version composition</version_command> <command detect_errors="exit_code">q2galaxy run composition ancombc '$inputs'</command> <configfiles> - <inputs name="inputs" data_style="paths"/> + <inputs name="inputs" data_style="staging_path_and_source_path"/> </configfiles> <inputs> <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency]" help="[required] The feature table to be used for ANCOM-BC computation."> @@ -68,7 +68,6 @@ <validator type="expression" message="Please verify this parameter.">value is not None and len(value) > 0</validator> </param> </repeat> - <param name="neg_lb" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="neg_lb: Bool" help="[default: No] Whether to classify a taxon as a structural zero using its asymptotic lower bound."/> <param name="tol" type="float" value="1e-05" label="tol: Float" help="[default: 1e-05] The iteration convergence tolerance for the E-M algorithm."/> <param name="max_iter" type="integer" value="100" label="max_iter: Int" help="[default: 100] The maximum number of iterations for the E-M algorithm."/> <param name="conserve" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="conserve: Bool" help="[default: No] Whether to use a conservative variance estimator for the test statistic. It is recommended if the sample size is small and/or the number of differentially abundant taxa is believed to be large."/>