changeset 1:86e36a2b44b0 draft

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__deblur commit 69da7976573cc07a363ac66bdacc9269d7cd3732
author q2d2
date Fri, 13 Jan 2023 22:42:39 +0000
parents 574ab3a299a9
children 61ee71aacf1c
files qiime2__deblur__denoise_other.xml test-data/.gitkeep test-data/denoise_16S.test0.demux-filtered.qza test-data/visualize_stats.test0.deblur-stats.qza
diffstat 3 files changed, 7 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/qiime2__deblur__denoise_other.xml	Mon Aug 29 19:25:44 2022 +0000
+++ b/qiime2__deblur__denoise_other.xml	Fri Jan 13 22:42:39 2023 +0000
@@ -1,31 +1,31 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2022, QIIME 2 development team.
+Copyright (c) 2023, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2022.8.1)
+    q2galaxy (version: 2022.11.1)
 for:
-    qiime2 (version: 2022.8.1)
+    qiime2 (version: 2022.11.1)
 -->
-<tool name="qiime2 deblur denoise-other" id="qiime2__deblur__denoise_other" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 deblur denoise-other" id="qiime2__deblur__denoise_other" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause">
     <description>Deblur sequences using a user-specified positive filter.</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2022.8</container>
+        <container type="docker">quay.io/qiime2/core:2022.11</container>
     </requirements>
     <version_command>q2galaxy version deblur</version_command>
-    <command detect_errors="aggressive">q2galaxy run deblur denoise_other '$inputs'</command>
+    <command detect_errors="exit_code">q2galaxy run deblur denoise_other '$inputs'</command>
     <configfiles>
         <inputs name="inputs" data_style="paths"/>
     </configfiles>
     <inputs>
         <param name="demultiplexed_seqs" type="data" format="qza" label="demultiplexed_seqs: SampleData[SequencesWithQuality | PairedEndSequencesWithQuality | JoinedSequencesWithQuality]" help="[required]  The demultiplexed sequences to be denoised.">
             <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="SampleData[SequencesWithQuality]"/>
                 <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/>
                 <filter type="add_value" value="SampleData[JoinedSequencesWithQuality]"/>
-                <filter type="add_value" value="SampleData[SequencesWithQuality]"/>
             </options>
             <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[JoinedSequencesWithQuality]', 'SampleData[PairedEndSequencesWithQuality]', 'SampleData[SequencesWithQuality]']</validator>
         </param>
Binary file test-data/denoise_16S.test0.demux-filtered.qza has changed
Binary file test-data/visualize_stats.test0.deblur-stats.qza has changed