Mercurial > repos > q2d2 > qiime2__demux__partition_samples_paired
comparison qiime2__demux__partition_samples_paired.xml @ 0:7a834db5d93a draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
| author | q2d2 |
|---|---|
| date | Thu, 25 Apr 2024 20:56:26 +0000 |
| parents | |
| children | c8df367887ca |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:7a834db5d93a |
|---|---|
| 1 <?xml version='1.0' encoding='utf-8'?> | |
| 2 <!-- | |
| 3 Copyright (c) 2024, QIIME 2 development team. | |
| 4 | |
| 5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) | |
| 6 --> | |
| 7 <!-- | |
| 8 This tool was automatically generated by: | |
| 9 q2galaxy (version: 2024.2.1) | |
| 10 for: | |
| 11 qiime2 (version: 2024.2.0) | |
| 12 --> | |
| 13 <tool name="qiime2 demux partition-samples-paired" id="qiime2__demux__partition_samples_paired" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> | |
| 14 <description>Split demultiplexed sequence data into partitions.</description> | |
| 15 <requirements> | |
| 16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container> | |
| 17 </requirements> | |
| 18 <version_command>q2galaxy version demux</version_command> | |
| 19 <command detect_errors="exit_code">q2galaxy run demux partition_samples_paired '$inputs'</command> | |
| 20 <configfiles> | |
| 21 <inputs name="inputs" data_style="staging_path_and_source_path"/> | |
| 22 </configfiles> | |
| 23 <inputs> | |
| 24 <param name="demux" type="data" format="qza" label="demux: SampleData[PairedEndSequencesWithQuality]" help="[required] The demultiplexed sequences to partition."> | |
| 25 <options options_filter_attribute="metadata.semantic_type"> | |
| 26 <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/> | |
| 27 </options> | |
| 28 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[PairedEndSequencesWithQuality]']</validator> | |
| 29 </param> | |
| 30 <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> | |
| 31 <param name="num_partitions" type="integer" min="1" optional="true" label="num_partitions: Int % Range(1, None)" help="[optional] The number of partitions to split the demultiplexed sequences into. Defaults to partitioning into individual samples."/> | |
| 32 </section> | |
| 33 </inputs> | |
| 34 <outputs> | |
| 35 <collection name="partitioned_demux" type="list"> | |
| 36 <discover_datasets directory="partitioned_demux" pattern="__name_and_ext__"/> | |
| 37 </collection> | |
| 38 </outputs> | |
| 39 <tests/> | |
| 40 <help> | |
| 41 QIIME 2: demux partition-samples-paired | |
| 42 ======================================= | |
| 43 Split demultiplexed sequence data into partitions. | |
| 44 | |
| 45 | |
| 46 Outputs: | |
| 47 -------- | |
| 48 :partitioned_demux.qza: The partitioned demultiplexed sequences. | |
| 49 | |
| 50 | | |
| 51 | |
| 52 Description: | |
| 53 ------------ | |
| 54 Partition demultiplexed paired end sequences into individual samples or the number of partitions specified. | |
| 55 | |
| 56 | |
| 57 | | |
| 58 | |
| 59 </help> | |
| 60 <citations> | |
| 61 <citation type="doi">10.1038/s41587-019-0209-9</citation> | |
| 62 </citations> | |
| 63 </tool> |