view qiime2__demux__partition_samples_paired.xml @ 0:7a834db5d93a draft

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__demux commit 389df0134cd0763dcf02aac6e623fc15f8861c1e

<?xml version='1.0' encoding='utf-8'?>
<!--
Copyright (c) 2024, QIIME 2 development team.

Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
-->
<!--
This tool was automatically generated by:
    q2galaxy (version: 2024.2.1)
for:
    qiime2 (version: 2024.2.0)
-->
<tool name="qiime2 demux partition-samples-paired" id="qiime2__demux__partition_samples_paired" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
    <description>Split demultiplexed sequence data into partitions.</description>
    <requirements>
        <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
    </requirements>
    <version_command>q2galaxy version demux</version_command>
    <command detect_errors="exit_code">q2galaxy run demux partition_samples_paired '$inputs'</command>
    <configfiles>
        <inputs name="inputs" data_style="staging_path_and_source_path"/>
    </configfiles>
    <inputs>
        <param name="demux" type="data" format="qza" label="demux: SampleData[PairedEndSequencesWithQuality]" help="[required]  The demultiplexed sequences to partition.">
            <options options_filter_attribute="metadata.semantic_type">
                <filter type="add_value" value="SampleData[PairedEndSequencesWithQuality]"/>
            </options>
            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['SampleData[PairedEndSequencesWithQuality]']</validator>
        </param>
        <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
            <param name="num_partitions" type="integer" min="1" optional="true" label="num_partitions: Int % Range(1, None)" help="[optional]  The number of partitions to split the demultiplexed sequences into. Defaults to partitioning into individual samples."/>
        </section>
    </inputs>
    <outputs>
        <collection name="partitioned_demux" type="list">
            <discover_datasets directory="partitioned_demux" pattern="__name_and_ext__"/>
        </collection>
    </outputs>
    <tests/>
    <help>
QIIME 2: demux partition-samples-paired
=======================================
Split demultiplexed sequence data into partitions.


Outputs:
--------
:partitioned_demux.qza: The partitioned demultiplexed sequences.

|  

Description:
------------
Partition demultiplexed paired end sequences into individual samples or the number of partitions specified.


|  

</help>
    <citations>
        <citation type="doi">10.1038/s41587-019-0209-9</citation>
    </citations>
</tool>