Mercurial > repos > q2d2 > qiime2__diversity__beta
changeset 4:7ed55f1323ee draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__diversity commit c7e80dcda727ce63b42aa8a946e9330310929797
| author | q2d2 |
|---|---|
| date | Mon, 03 Jun 2024 23:19:09 +0000 |
| parents | 525d07dd31b2 |
| children | 97a8f4d7b51d |
| files | qiime2__diversity__beta.xml test-data/alpha_correlation.test0.alpha-div-faith-pd.qza test-data/alpha_group_significance.test0.alpha-div-faith-pd.qza |
| diffstat | 3 files changed, 6 insertions(+), 7 deletions(-) [+] |
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--- a/qiime2__diversity__beta.xml Thu Apr 25 20:56:59 2024 +0000 +++ b/qiime2__diversity__beta.xml Mon Jun 03 23:19:09 2024 +0000 @@ -6,14 +6,14 @@ --> <!-- This tool was automatically generated by: - q2galaxy (version: 2024.2.1) + q2galaxy (version: 2024.5.0) for: - qiime2 (version: 2024.2.0) + qiime2 (version: 2024.5.0) --> -<tool name="qiime2 diversity beta" id="qiime2__diversity__beta" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 diversity beta" id="qiime2__diversity__beta" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause"> <description>Beta diversity</description> <requirements> - <container type="docker">quay.io/qiime2/amplicon:2024.2</container> + <container type="docker">quay.io/qiime2/amplicon:2024.5</container> </requirements> <version_command>q2galaxy version diversity</version_command> <command detect_errors="exit_code">q2galaxy run diversity beta '$inputs'</command> @@ -23,13 +23,13 @@ <inputs> <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence]" help="[required] The feature table containing the samples over which beta diversity should be computed."> <options options_filter_attribute="metadata.semantic_type"> - <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> <filter type="add_value" value="FeatureTable[Frequency]"/> <filter type="add_value" value="FeatureTable[RelativeFrequency]"/> + <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> </options> <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator> </param> - <param name="metric" type="select" label="metric: Str % Choices('aitchison', 'braycurtis', 'canberra', 'canberra_adkins', 'chebyshev', 'cityblock', 'correlation', 'cosine', 'dice', 'euclidean', 'hamming', 'jaccard', 'jensenshannon', 'kulsinski', 'matching', 'minkowski', 'rogerstanimoto', 'russellrao', 'seuclidean', 'sokalmichener', 'sokalsneath', 'sqeuclidean', 'yule')"> + <param name="metric" type="select" label="metric: Str % Choices('aitchison', 'braycurtis', 'canberra', 'canberra_adkins', 'chebyshev', 'cityblock', 'correlation', 'cosine', 'dice', 'euclidean', 'hamming', 'jaccard', 'jensenshannon', 'matching', 'minkowski', 'rogerstanimoto', 'russellrao', 'seuclidean', 'sokalmichener', 'sokalsneath', 'sqeuclidean', 'yule')"> <option value="__q2galaxy__::literal::None">Selection required</option> <option value="aitchison">aitchison</option> <option value="braycurtis">braycurtis</option> @@ -44,7 +44,6 @@ <option value="hamming">hamming</option> <option value="jaccard">jaccard</option> <option value="jensenshannon">jensenshannon</option> - <option value="kulsinski">kulsinski</option> <option value="matching">matching</option> <option value="minkowski">minkowski</option> <option value="rogerstanimoto">rogerstanimoto</option>