Mercurial > repos > q2d2 > qiime2__feature_classifier__classify_hybrid_vsearch_sklearn
changeset 3:9d30ef1580f6 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_classifier commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
| author | q2d2 |
|---|---|
| date | Thu, 25 Apr 2024 21:05:30 +0000 |
| parents | abdf08c37b16 |
| children | 9162ded52c6a |
| files | qiime2__feature_classifier__classify_hybrid_vsearch_sklearn.xml |
| diffstat | 1 files changed, 6 insertions(+), 7 deletions(-) [+] |
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--- a/qiime2__feature_classifier__classify_hybrid_vsearch_sklearn.xml Thu Jun 08 19:43:50 2023 +0000 +++ b/qiime2__feature_classifier__classify_hybrid_vsearch_sklearn.xml Thu Apr 25 21:05:30 2024 +0000 @@ -1,24 +1,24 @@ <?xml version='1.0' encoding='utf-8'?> <!-- -Copyright (c) 2023, QIIME 2 development team. +Copyright (c) 2024, QIIME 2 development team. Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) --> <!-- This tool was automatically generated by: - q2galaxy (version: 2023.5.0) + q2galaxy (version: 2024.2.1) for: - qiime2 (version: 2023.5.1) + qiime2 (version: 2024.2.0) --> -<tool name="qiime2 feature-classifier classify-hybrid-vsearch-sklearn" id="qiime2__feature_classifier__classify_hybrid_vsearch_sklearn" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 feature-classifier classify-hybrid-vsearch-sklearn" id="qiime2__feature_classifier__classify_hybrid_vsearch_sklearn" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> <description>ALPHA Hybrid classifier: VSEARCH exact match + sklearn classifier</description> <requirements> - <container type="docker">quay.io/qiime2/core:2023.5</container> + <container type="docker">quay.io/qiime2/amplicon:2024.2</container> </requirements> <version_command>q2galaxy version feature_classifier</version_command> <command detect_errors="exit_code">q2galaxy run feature_classifier classify_hybrid_vsearch_sklearn '$inputs'</command> <configfiles> - <inputs name="inputs" data_style="paths"/> + <inputs name="inputs" data_style="staging_path_and_source_path"/> </configfiles> <inputs> <param name="query" type="data" format="qza" label="query: FeatureData[Sequence]" help="[required] Query Sequences."> @@ -118,7 +118,6 @@ <option value="reverse-complement">reverse-complement</option> <option value="auto" selected="true">auto</option> </param> - <param name="threads" type="integer" min="1" value="1" label="threads: Int % Range(1, None)" help="[default: 1] Number of threads to use for job parallelization."/> <param name="prefilter" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" checked="true" label="prefilter: Bool" help="[default: Yes] Toggle positive filter of query sequences on or off."/> <param name="sample_size" type="integer" min="1" value="1000" label="sample_size: Int % Range(1, None)" help="[default: 1000] Randomly extract the given number of sequences from the reference database to use for prefiltering. This parameter is ignored if `prefilter` is disabled."/> <param name="randseed" type="integer" min="0" value="0" label="randseed: Int % Range(0, None)" help="[default: 0] Use integer as a seed for the pseudo-random generator used during prefiltering. A given seed always produces the same output, which is useful for replicability. Set to 0 to use a pseudo-random seed. This parameter is ignored if `prefilter` is disabled."/>