comparison qiime2__feature_classifier__classify_sklearn.xml @ 7:9cac0601eb35 draft default tip

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_classifier commit 9436cc47c72b58a6a3d3a5c2ee075689c2926ef0

6:83b0feec07cf

Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
-->
<!--
This tool was automatically generated by:
    q2galaxy (version: 2025.4.0)
for:
    qiime2 (version: 2025.4.0)
-->
<tool name="qiime2 feature-classifier classify-sklearn" id="qiime2__feature_classifier__classify_sklearn" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause">
    <description>Pre-fitted sklearn-based taxonomy classifier</description>
    <xrefs>
        <xref type="bio.tools">qiime2</xref>
    </xrefs>
    <requirements>
        <container type="docker">quay.io/qiime2/amplicon:2025.4</container>
    </requirements>
    <version_command>q2galaxy version feature_classifier</version_command>
    <command detect_errors="exit_code">q2galaxy run feature_classifier classify_sklearn '$inputs'</command>
    <configfiles>
        <inputs name="inputs" data_style="staging_path_and_source_path"/>

                </when>
                <when value="__q2galaxy__::control::Float X Range(0__comma__ 1__comma__ inclusive_end=True)">
                    <param name="confidence" type="float" min="0" max="1" value="0.7" label="confidence: Float % Range(0, 1, inclusive_end=True)" help="[default: 0.7]  Confidence threshold for limiting taxonomic depth. Set to &quot;disable&quot; to disable confidence calculation, or 0 to calculate confidence but not apply it to limit the taxonomic depth of the assignments."/>
                </when>
            </conditional>
            <param name="read_orientation" type="select" label="read_orientation: Str % Choices('same', 'reverse-complement', 'auto')" display="radio">
                <option value="same">same</option>
                <option value="reverse-complement">reverse-complement</option>
                <option value="auto" selected="true">auto</option>
            </param>
        </section>
    </inputs>
    <outputs>
        <data name="classification" format="qza" label="${tool.name} on ${on_string}: classification.qza" from_work_dir="classification.qza"/>

7:9cac0601eb35

Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
-->
<!--
This tool was automatically generated by:
    q2galaxy (version: 2025.7.0)
for:
    qiime2 (version: 2025.7.0)
-->
<tool name="qiime2 feature-classifier classify-sklearn" id="qiime2__feature_classifier__classify_sklearn" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause">
    <description>Pre-fitted sklearn-based taxonomy classifier</description>
    <xrefs>
        <xref type="bio.tools">qiime2</xref>
    </xrefs>
    <requirements>
        <container type="docker">quay.io/qiime2/amplicon:2025.7</container>
    </requirements>
    <version_command>q2galaxy version feature_classifier</version_command>
    <command detect_errors="exit_code">q2galaxy run feature_classifier classify_sklearn '$inputs'</command>
    <configfiles>
        <inputs name="inputs" data_style="staging_path_and_source_path"/>

                </when>
                <when value="__q2galaxy__::control::Float X Range(0__comma__ 1__comma__ inclusive_end=True)">
                    <param name="confidence" type="float" min="0" max="1" value="0.7" label="confidence: Float % Range(0, 1, inclusive_end=True)" help="[default: 0.7]  Confidence threshold for limiting taxonomic depth. Set to &quot;disable&quot; to disable confidence calculation, or 0 to calculate confidence but not apply it to limit the taxonomic depth of the assignments."/>
                </when>
            </conditional>
            <param name="read_orientation" type="select" label="read_orientation: Str % Choices('same', 'reverse-complement', 'auto', 'both')" display="radio">
                <option value="same">same</option>
                <option value="reverse-complement">reverse-complement</option>
                <option value="auto" selected="true">auto</option>
                <option value="both">both</option>
            </param>
        </section>
    </inputs>
    <outputs>
        <data name="classification" format="qza" label="${tool.name} on ${on_string}: classification.qza" from_work_dir="classification.qza"/>