view qiime2__feature_table__merge_seqs.xml @ 5:6d3775f3a859 draft default tip

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 5f71b597c9495eae67a447744fded834f56ca1f7

<?xml version='1.0' encoding='utf-8'?>
<!--
Copyright (c) 2024, QIIME 2 development team.

Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
-->
<!--
This tool was automatically generated by:
    q2galaxy (version: 2024.10.0)
for:
    qiime2 (version: 2024.10.1)
-->
<tool name="qiime2 feature-table merge-seqs" id="qiime2__feature_table__merge_seqs" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
    <description>Combine collections of feature sequences</description>
    <xrefs>
        <xref type="bio.tools">qiime2</xref>
    </xrefs>
    <requirements>
        <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
    </requirements>
    <version_command>q2galaxy version feature_table</version_command>
    <command detect_errors="exit_code">q2galaxy run feature_table merge_seqs '$inputs'</command>
    <configfiles>
        <inputs name="inputs" data_style="staging_path_and_source_path"/>
    </configfiles>
    <inputs>
        <param name="data" type="data" format="qza" label="data: List[FeatureData[Sequence]]" help="[required]  The collection of feature sequences to be merged." multiple="true">
            <options options_filter_attribute="metadata.semantic_type">
                <filter type="add_value" value="FeatureData[Sequence]"/>
            </options>
        </param>
    </inputs>
    <outputs>
        <data name="merged_data" format="qza" label="${tool.name} on ${on_string}: merged_data.qza" from_work_dir="merged_data.qza"/>
    </outputs>
    <tests>
        <test>
            <param name="data" value="merge_seqs.test0.seqs1.qza,merge_seqs.test0.seqs2.qza" ftype="qza"/>
            <output name="merged_data" ftype="qza">
                <assert_contents>
                    <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml">
                        <has_line_matching expression="type: FeatureData\[Sequence\]"/>
                    </has_archive_member>
                </assert_contents>
            </output>
        </test>
    </tests>
    <help>
QIIME 2: feature-table merge-seqs
=================================
Combine collections of feature sequences


Outputs:
--------
:merged_data.qza: The resulting collection of feature sequences containing all feature sequences provided.

|  

Description:
------------
Combines feature data objects which may or may not contain data for the same features. If different feature data is present for the same feature id in the inputs, the data from the first will be propagated to the result.

Examples:
---------

feature_table_merge_seqs
************************
Using the ``qiime2 feature-table merge-seqs`` tool:
 #. For *"data"*, use ctrl-(or command)-click to select the following inputs:

    #. ``#: seqs1.qza``
    #. ``#: seqs2.qza``

 #. Press the ``Execute`` button.



|  

</help>
    <citations>
        <citation type="doi">10.1038/s41587-019-0209-9</citation>
    </citations>
</tool>