annotate qiime2__feature_table__merge_taxa.xml @ 2:a0c16a5250e4 draft

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__feature_table commit 65e4952f33eb335528e8553150e9097e5ea8f556

<?xml version='1.0' encoding='utf-8'?>
<!--
Copyright (c) 2023, QIIME 2 development team.

Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
-->
<!--
This tool was automatically generated by:
    q2galaxy (version: 2023.5.0)
for:
    qiime2 (version: 2023.5.1)
-->
<tool name="qiime2 feature-table merge-taxa" id="qiime2__feature_table__merge_taxa" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause">
    <description>Combine collections of feature taxonomies</description>
    <requirements>
        <container type="docker">quay.io/qiime2/core:2023.5</container>
    </requirements>
    <version_command>q2galaxy version feature_table</version_command>
    <command detect_errors="exit_code">q2galaxy run feature_table merge_taxa '$inputs'</command>
    <configfiles>
        <inputs name="inputs" data_style="paths"/>
    </configfiles>
    <inputs>
        <param name="data" type="data" format="qza" label="data: List[FeatureData[Taxonomy]]" help="[required]  The collection of feature taxonomies to be merged." multiple="true">
            <options options_filter_attribute="metadata.semantic_type">
                <filter type="add_value" value="FeatureData[Taxonomy]"/>
            </options>
        </param>
    </inputs>
    <outputs>
        <data name="merged_data" format="qza" label="${tool.name} on ${on_string}: merged_data.qza" from_work_dir="merged_data.qza"/>
    </outputs>
    <tests>
        <test>
            <param name="data" value="merge_taxa.test0.tax1.qza,merge_taxa.test0.tax2.qza" ftype="qza"/>
            <output name="merged_data" ftype="qza">
                <assert_contents>
                    <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml">
                        <has_line_matching expression="type: FeatureData\[Taxonomy\]"/>
                    </has_archive_member>
                </assert_contents>
            </output>
        </test>
    </tests>
    <help>
QIIME 2: feature-table merge-taxa
=================================
Combine collections of feature taxonomies


Outputs:
--------
:merged_data.qza: The resulting collection of feature taxonomies containing all feature taxonomies provided.

|  

Description:
------------
Combines a pair of feature data objects which may or may not contain data for the same features. If different feature data is present for the same feature id in the inputs, the data from the first will be propagated to the result.

Examples:
---------

feature_table_merge_taxa
************************
Using the ``qiime2 feature-table merge-taxa`` tool:
 #. For *"data"*, use ctrl-(or command)-click to select the following inputs:

    #. ``#: tax1.qza``
    #. ``#: tax2.qza``

 #. Press the ``Execute`` button.



|  

</help>
    <citations>
        <citation type="doi">10.1038/s41587-019-0209-9</citation>
    </citations>
</tool>