Mercurial > repos > q2d2 > qiime2__fragment_insertion__classify_otus_experimental
annotate qiime2__fragment_insertion__classify_otus_experimental.xml @ 3:d15eba82b356 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
author | q2d2 |
---|---|
date | Thu, 25 Apr 2024 21:15:00 +0000 |
parents | 52cffcc84c14 |
children | 2821f5e19fe7 |
rev | line source |
---|---|
0
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1 <?xml version='1.0' encoding='utf-8'?> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
2 <!-- |
3
d15eba82b356
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
2
diff
changeset
|
3 Copyright (c) 2024, QIIME 2 development team. |
0
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
4 |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
6 --> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
7 <!-- |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
8 This tool was automatically generated by: |
3
d15eba82b356
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
2
diff
changeset
|
9 q2galaxy (version: 2024.2.1) |
0
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
10 for: |
3
d15eba82b356
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
2
diff
changeset
|
11 qiime2 (version: 2024.2.0) |
0
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
12 --> |
3
d15eba82b356
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
2
diff
changeset
|
13 <tool name="qiime2 fragment-insertion classify-otus-experimental" id="qiime2__fragment_insertion__classify_otus_experimental" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> |
0
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
14 <description>Experimental: Obtain taxonomic lineages, by finding closest OTU in reference phylogeny.</description> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
15 <requirements> |
3
d15eba82b356
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
2
diff
changeset
|
16 <container type="docker">quay.io/qiime2/amplicon:2024.2</container> |
0
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
17 </requirements> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
18 <version_command>q2galaxy version fragment_insertion</version_command> |
1
042aaca35af1
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
19 <command detect_errors="exit_code">q2galaxy run fragment_insertion classify_otus_experimental '$inputs'</command> |
0
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
20 <configfiles> |
3
d15eba82b356
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
q2d2
parents:
2
diff
changeset
|
21 <inputs name="inputs" data_style="staging_path_and_source_path"/> |
0
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
22 </configfiles> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
23 <inputs> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
24 <param name="representative_sequences" type="data" format="qza" label="representative_sequences: FeatureData[Sequence]" help="[required] The sequences used for a 'sepp' run to produce the 'tree'."> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
25 <options options_filter_attribute="metadata.semantic_type"> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
26 <filter type="add_value" value="FeatureData[Sequence]"/> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
27 </options> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
28 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[Sequence]']</validator> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
29 </param> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
30 <param name="tree" type="data" format="qza" label="tree: Phylogeny[Rooted]" help="[required] The tree resulting from inserting fragments into a reference phylogeny, i.e. the output of function 'sepp'"> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
31 <options options_filter_attribute="metadata.semantic_type"> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
32 <filter type="add_value" value="Phylogeny[Rooted]"/> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
33 </options> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
34 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Phylogeny[Rooted]']</validator> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
35 </param> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
36 <param name="reference_taxonomy" type="data" format="qza" label="reference_taxonomy: FeatureData[Taxonomy]" help="[required] Reference taxonomic table that maps every OTU-ID into a taxonomic lineage string."> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
37 <options options_filter_attribute="metadata.semantic_type"> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
38 <filter type="add_value" value="FeatureData[Taxonomy]"/> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
39 </options> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
40 <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[Taxonomy]']</validator> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
41 </param> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
42 </inputs> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
43 <outputs> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
44 <data name="classification" format="qza" label="${tool.name} on ${on_string}: classification.qza" from_work_dir="classification.qza"/> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
45 </outputs> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
46 <tests/> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
47 <help> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
48 QIIME 2: fragment-insertion classify-otus-experimental |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
49 ====================================================== |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
50 Experimental: Obtain taxonomic lineages, by finding closest OTU in reference phylogeny. |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
51 |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
52 |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
53 Outputs: |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
54 -------- |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
55 :classification.qza: Taxonomic lineages for inserted fragments. |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
56 |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
57 | |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
58 |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
59 Description: |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
60 ------------ |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
61 Experimental: Use the resulting tree from 'sepp' and find closest OTU-ID for every inserted fragment. Then, look up the reference lineage string in the reference taxonomy. |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
62 |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
63 |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
64 | |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
65 |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
66 </help> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
67 <citations> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
68 <citation type="doi">10.1128/mSystems.00021-18</citation> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
69 <citation type="doi">10.1371/journal.pone.0031009</citation> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
70 <citation type="doi">10.1371/journal.pcbi.1002195</citation> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
71 <citation type="bibtex">@article{cite4, |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
72 author = {Matsen, Frederick A and Kodner, Robin B and Armbrust, E Virginia}, |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
73 journal = {BMC bioinformatics}, |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
74 number = {1}, |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
75 pages = {538}, |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
76 publisher = {BioMed Central}, |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
77 title = {pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree}, |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
78 volume = {11}, |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
79 year = {2010} |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
80 } |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
81 </citation> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
82 <citation type="doi">10.1038/s41587-019-0209-9</citation> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
83 </citations> |
4139c3491d30
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__fragment_insertion commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
84 </tool> |