Mercurial > repos > q2d2 > qiime2__longitudinal__anova
diff qiime2__longitudinal__anova.xml @ 0:cc93337ddb98 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__longitudinal commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
| author | q2d2 |
|---|---|
| date | Mon, 29 Aug 2022 20:11:55 +0000 |
| parents | |
| children | b8863095f1a9 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/qiime2__longitudinal__anova.xml Mon Aug 29 20:11:55 2022 +0000 @@ -0,0 +1,80 @@ +<?xml version='1.0' encoding='utf-8'?> +<!-- +Copyright (c) 2022, QIIME 2 development team. + +Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) +--> +<!-- +This tool was automatically generated by: + q2galaxy (version: 2022.8.1) +for: + qiime2 (version: 2022.8.1) +--> +<tool name="qiime2 longitudinal anova" id="qiime2__longitudinal__anova" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause"> + <description>ANOVA test</description> + <requirements> + <container type="docker">quay.io/qiime2/core:2022.8</container> + </requirements> + <version_command>q2galaxy version longitudinal</version_command> + <command detect_errors="aggressive">q2galaxy run longitudinal anova '$inputs'</command> + <configfiles> + <inputs name="inputs" data_style="paths"/> + </configfiles> + <inputs> + <repeat name="metadata" min="1" help="[required] Sample metadata containing formula terms." title="metadata: Metadata"> + <conditional name="__q2galaxy__GUI__conditional__metadata__"> + <param name="type" type="select" label="metadata: Metadata"> + <option value="tsv" selected="true">Metadata from TSV</option> + <option value="qza">Metadata from Artifact</option> + </param> + <when value="tsv"> + <param name="source" type="data" format="tabular,qiime2.tabular" label="Metadata Source"/> + </when> + <when value="qza"> + <param name="source" type="data" format="qza" label="Metadata Source"/> + </when> + </conditional> + </repeat> + <param name="formula" type="text" label="formula: Str" help="[required] R-style formula specifying the model. All terms must be present in the sample metadata or metadata-transformable artifacts and can be continuous or categorical metadata columns. Formulae will be in the format "a ~ b + c", where "a" is the metric (dependent variable) and "b" and "c" are independent covariates. Use "+" to add a variable; "+ a:b" to add an interaction between variables a and b; "*" to include a variable and all interactions; and "-" to subtract a particular term (e.g., an interaction term). See https://patsy.readthedocs.io/en/latest/formulas.html for full documentation of valid formula operators. Always enclose formulae in quotes to avoid unpleasant surprises."> + <sanitizer> + <valid initial="string.printable"/> + </sanitizer> + <validator type="expression" message="Please verify this parameter.">value is not None and len(value) > 0</validator> + </param> + <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> + <param name="sstype" type="select" label="sstype: Str % Choices('I', 'II', 'III')" display="radio"> + <option value="I">I</option> + <option value="II" selected="true">II</option> + <option value="III">III</option> + </param> + </section> + </inputs> + <outputs> + <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/> + </outputs> + <tests/> + <help> +QIIME 2: longitudinal anova +=========================== +ANOVA test + + +Outputs: +-------- +:visualization.qzv: <no description> + +| + +Description: +------------ +Perform an ANOVA test on any factors present in a metadata file and/or metadata-transformable artifacts. This is followed by pairwise t-tests to examine pairwise differences between categorical sample groups. + + +| + +</help> + <citations> + <citation type="doi">10.1128/mSystems.00219-18</citation> + <citation type="doi">10.1038/s41587-019-0209-9</citation> + </citations> +</tool>