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changeset 0:cc93337ddb98 draft

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__longitudinal commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
author q2d2
date Mon, 29 Aug 2022 20:11:55 +0000
parents
children b8863095f1a9
files qiime2__longitudinal__anova.xml test-data/.gitkeep
diffstat 1 files changed, 80 insertions(+), 0 deletions(-) [+]
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+++ b/qiime2__longitudinal__anova.xml	Mon Aug 29 20:11:55 2022 +0000
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+<?xml version='1.0' encoding='utf-8'?>
+<!--
+Copyright (c) 2022, QIIME 2 development team.
+
+Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
+-->
+<!--
+This tool was automatically generated by:
+    q2galaxy (version: 2022.8.1)
+for:
+    qiime2 (version: 2022.8.1)
+-->
+<tool name="qiime2 longitudinal anova" id="qiime2__longitudinal__anova" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause">
+    <description>ANOVA test</description>
+    <requirements>
+        <container type="docker">quay.io/qiime2/core:2022.8</container>
+    </requirements>
+    <version_command>q2galaxy version longitudinal</version_command>
+    <command detect_errors="aggressive">q2galaxy run longitudinal anova '$inputs'</command>
+    <configfiles>
+        <inputs name="inputs" data_style="paths"/>
+    </configfiles>
+    <inputs>
+        <repeat name="metadata" min="1" help="[required]  Sample metadata containing formula terms." title="metadata: Metadata">
+            <conditional name="__q2galaxy__GUI__conditional__metadata__">
+                <param name="type" type="select" label="metadata: Metadata">
+                    <option value="tsv" selected="true">Metadata from TSV</option>
+                    <option value="qza">Metadata from Artifact</option>
+                </param>
+                <when value="tsv">
+                    <param name="source" type="data" format="tabular,qiime2.tabular" label="Metadata Source"/>
+                </when>
+                <when value="qza">
+                    <param name="source" type="data" format="qza" label="Metadata Source"/>
+                </when>
+            </conditional>
+        </repeat>
+        <param name="formula" type="text" label="formula: Str" help="[required]  R-style formula specifying the model. All terms must be present in the sample metadata or metadata-transformable artifacts and can be continuous or categorical metadata columns. Formulae will be in the format &quot;a ~ b + c&quot;, where &quot;a&quot; is the metric (dependent variable) and &quot;b&quot; and &quot;c&quot; are independent covariates. Use &quot;+&quot; to add a variable; &quot;+ a:b&quot; to add an interaction between variables a and b; &quot;*&quot; to include a variable and all interactions; and &quot;-&quot; to subtract a particular term (e.g., an interaction term). See https://patsy.readthedocs.io/en/latest/formulas.html for full documentation of valid formula operators. Always enclose formulae in quotes to avoid unpleasant surprises.">
+            <sanitizer>
+                <valid initial="string.printable"/>
+            </sanitizer>
+            <validator type="expression" message="Please verify this parameter.">value is not None and len(value) &gt; 0</validator>
+        </param>
+        <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
+            <param name="sstype" type="select" label="sstype: Str % Choices('I', 'II', 'III')" display="radio">
+                <option value="I">I</option>
+                <option value="II" selected="true">II</option>
+                <option value="III">III</option>
+            </param>
+        </section>
+    </inputs>
+    <outputs>
+        <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
+    </outputs>
+    <tests/>
+    <help>
+QIIME 2: longitudinal anova
+===========================
+ANOVA test
+
+
+Outputs:
+--------
+:visualization.qzv: &lt;no description&gt;
+
+|  
+
+Description:
+------------
+Perform an ANOVA test on any factors present in a metadata file and/or metadata-transformable artifacts. This is followed by pairwise t-tests to examine pairwise differences between categorical sample groups.
+
+
+|  
+
+</help>
+    <citations>
+        <citation type="doi">10.1128/mSystems.00219-18</citation>
+        <citation type="doi">10.1038/s41587-019-0209-9</citation>
+    </citations>
+</tool>