Mercurial > repos > q2d2 > qiime2__metadata__distance_matrix
changeset 2:8a43985a8f35 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__metadata commit 65e4952f33eb335528e8553150e9097e5ea8f556
| author | q2d2 |
|---|---|
| date | Thu, 08 Jun 2023 19:49:40 +0000 |
| parents | a75c3ed80cff |
| children | 873c9175076f |
| files | qiime2__metadata__distance_matrix.xml test-data/.gitkeep test-data/tabulate.test0.demux-stats.qza test-data/tabulate.test1.faith-pd-vector.qza test-data/tabulate.test1.sample-metadata.tsv |
| diffstat | 4 files changed, 4 insertions(+), 40 deletions(-) [+] |
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--- a/qiime2__metadata__distance_matrix.xml Fri Jan 13 22:58:05 2023 +0000 +++ b/qiime2__metadata__distance_matrix.xml Thu Jun 08 19:49:40 2023 +0000 @@ -6,14 +6,14 @@ --> <!-- This tool was automatically generated by: - q2galaxy (version: 2022.11.1) + q2galaxy (version: 2023.5.0) for: - qiime2 (version: 2022.11.1) + qiime2 (version: 2023.5.1) --> -<tool name="qiime2 metadata distance-matrix" id="qiime2__metadata__distance_matrix" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 metadata distance-matrix" id="qiime2__metadata__distance_matrix" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> <description>Create a distance matrix from a numeric Metadata column</description> <requirements> - <container type="docker">quay.io/qiime2/core:2022.11</container> + <container type="docker">quay.io/qiime2/core:2023.5</container> </requirements> <version_command>q2galaxy version metadata</version_command> <command detect_errors="exit_code">q2galaxy run metadata distance_matrix '$inputs'</command>
--- a/test-data/tabulate.test1.sample-metadata.tsv Fri Jan 13 22:58:05 2023 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,36 +0,0 @@ -sample-id barcode-sequence body-site year month day subject reported-antibiotic-usage days-since-experiment-start -#q2:types categorical categorical numeric numeric numeric categorical categorical numeric -L1S8 AGCTGACTAGTC gut 2008 10 28 subject-1 Yes 0 -L1S57 ACACACTATGGC gut 2009 1 20 subject-1 No 84 -L1S76 ACTACGTGTGGT gut 2009 2 17 subject-1 No 112 -L1S105 AGTGCGATGCGT gut 2009 3 17 subject-1 No 140 -L2S155 ACGATGCGACCA left palm 2009 1 20 subject-1 No 84 -L2S175 AGCTATCCACGA left palm 2009 2 17 subject-1 No 112 -L2S204 ATGCAGCTCAGT left palm 2009 3 17 subject-1 No 140 -L2S222 CACGTGACATGT left palm 2009 4 14 subject-1 No 168 -L3S242 ACAGTTGCGCGA right palm 2008 10 28 subject-1 Yes 0 -L3S294 CACGACAGGCTA right palm 2009 1 20 subject-1 No 84 -L3S313 AGTGTCACGGTG right palm 2009 2 17 subject-1 No 112 -L3S341 CAAGTGAGAGAG right palm 2009 3 17 subject-1 No 140 -L3S360 CATCGTATCAAC right palm 2009 4 14 subject-1 No 168 -L5S104 CAGTGTCAGGAC tongue 2008 10 28 subject-1 Yes 0 -L5S155 ATCTTAGACTGC tongue 2009 1 20 subject-1 No 84 -L5S174 CAGACATTGCGT tongue 2009 2 17 subject-1 No 112 -L5S203 CGATGCACCAGA tongue 2009 3 17 subject-1 No 140 -L5S222 CTAGAGACTCTT tongue 2009 4 14 subject-1 No 168 -L1S140 ATGGCAGCTCTA gut 2008 10 28 subject-2 Yes 0 -L1S208 CTGAGATACGCG gut 2009 1 20 subject-2 No 84 -L1S257 CCGACTGAGATG gut 2009 3 17 subject-2 No 140 -L1S281 CCTCTCGTGATC gut 2009 4 14 subject-2 No 168 -L2S240 CATATCGCAGTT left palm 2008 10 28 subject-2 Yes 0 -L2S309 CGTGCATTATCA left palm 2009 1 20 subject-2 No 84 -L2S357 CTAACGCAGTCA left palm 2009 3 17 subject-2 No 140 -L2S382 CTCAATGACTCA left palm 2009 4 14 subject-2 No 168 -L3S378 ATCGATCTGTGG right palm 2008 10 28 subject-2 Yes 0 -L4S63 CTCGTGGAGTAG right palm 2009 1 20 subject-2 No 84 -L4S112 GCGTTACACACA right palm 2009 3 17 subject-2 No 140 -L4S137 GAACTGTATCTC right palm 2009 4 14 subject-2 No 168 -L5S240 CTGGACTCATAG tongue 2008 10 28 subject-2 Yes 0 -L6S20 GAGGCTCATCAT tongue 2009 1 20 subject-2 No 84 -L6S68 GATACGTCCTGA tongue 2009 3 17 subject-2 No 140 -L6S93 GATTAGCACTCT tongue 2009 4 14 subject-2 No 168