Mercurial > repos > q2d2 > qiime2__phylogeny__align_to_tree_mafft_iqtree
changeset 2:25daaf299138 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny commit 65e4952f33eb335528e8553150e9097e5ea8f556
| author | q2d2 |
|---|---|
| date | Thu, 08 Jun 2023 19:50:18 +0000 |
| parents | 9f7b98404a1f |
| children | 7cd05b132c74 |
| files | qiime2__phylogeny__align_to_tree_mafft_iqtree.xml test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza |
| diffstat | 2 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/qiime2__phylogeny__align_to_tree_mafft_iqtree.xml Fri Jan 13 22:58:30 2023 +0000 +++ b/qiime2__phylogeny__align_to_tree_mafft_iqtree.xml Thu Jun 08 19:50:18 2023 +0000 @@ -6,14 +6,14 @@ --> <!-- This tool was automatically generated by: - q2galaxy (version: 2022.11.1) + q2galaxy (version: 2023.5.0) for: - qiime2 (version: 2022.11.1) + qiime2 (version: 2023.5.1) --> -<tool name="qiime2 phylogeny align-to-tree-mafft-iqtree" id="qiime2__phylogeny__align_to_tree_mafft_iqtree" version="2022.11.1+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 phylogeny align-to-tree-mafft-iqtree" id="qiime2__phylogeny__align_to_tree_mafft_iqtree" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> <description>Build a phylogenetic tree using iqtree and mafft alignment.</description> <requirements> - <container type="docker">quay.io/qiime2/core:2022.11</container> + <container type="docker">quay.io/qiime2/core:2023.5</container> </requirements> <version_command>q2galaxy version phylogeny</version_command> <command detect_errors="exit_code">q2galaxy run phylogeny align_to_tree_mafft_iqtree '$inputs'</command> @@ -333,7 +333,7 @@ <option value="TEST">TEST</option> </param> <param name="fast" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="fast: Bool" help="[default: No] Fast search to resemble FastTree."/> - <param name="alrt" type="integer" min="1000" optional="true" label="alrt: Int % Range(1000, None)" help="[optional] Single branch test method. Number of bootstrap replicates to perform an SH-like approximate likelihood ratio test (SH-aLRT). Minimum of 1000 replicates is recomended."/> + <param name="alrt" type="integer" min="1000" optional="true" label="alrt: Int % Range(1000, None)" help="[optional] Single branch test method. Number of bootstrap replicates to perform an SH-like approximate likelihood ratio test (SH-aLRT). Minimum of 1000 replicates is required."/> <param name="seed" type="integer" optional="true" label="seed: Int" help="[optional] Random number seed for the iqtree parsimony starting tree. This allows you to reproduce tree results. If not supplied then one will be randomly chosen."/> <param name="stop_iter" type="integer" min="1" optional="true" label="stop_iter: Int % Range(1, None)" help="[optional] Number of unsuccessful iterations to stop. If not set, program defaults will be used. See IQ-TREE manual for details."/> <param name="perturb_nni_strength" type="float" min="0.01" max="0.999999" optional="true" label="perturb_nni_strength: Float % Range(0.01, 1.0)" help="[optional] Perturbation strength for randomized NNI. If not set, program defaults will be used. See IQ-TREE manual for details."/>