Mercurial > repos > q2d2 > qiime2__phylogeny__raxml_rapid_bootstrap
changeset 3:e46713e5531a draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__phylogeny commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
| author | q2d2 |
|---|---|
| date | Thu, 25 Apr 2024 21:17:11 +0000 |
| parents | 1de3a5758b8c |
| children | eb6c15cd603b |
| files | qiime2__phylogeny__raxml_rapid_bootstrap.xml test-data/align_to_tree_mafft_fasttree.test0.rep-seqs.qza |
| diffstat | 2 files changed, 6 insertions(+), 7 deletions(-) [+] |
line wrap: on
line diff
--- a/qiime2__phylogeny__raxml_rapid_bootstrap.xml Thu Jun 08 19:49:58 2023 +0000 +++ b/qiime2__phylogeny__raxml_rapid_bootstrap.xml Thu Apr 25 21:17:11 2024 +0000 @@ -1,24 +1,24 @@ <?xml version='1.0' encoding='utf-8'?> <!-- -Copyright (c) 2023, QIIME 2 development team. +Copyright (c) 2024, QIIME 2 development team. Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) --> <!-- This tool was automatically generated by: - q2galaxy (version: 2023.5.0) + q2galaxy (version: 2024.2.1) for: - qiime2 (version: 2023.5.1) + qiime2 (version: 2024.2.0) --> -<tool name="qiime2 phylogeny raxml-rapid-bootstrap" id="qiime2__phylogeny__raxml_rapid_bootstrap" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 phylogeny raxml-rapid-bootstrap" id="qiime2__phylogeny__raxml_rapid_bootstrap" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> <description>Construct a phylogenetic tree with bootstrap supports using RAxML.</description> <requirements> - <container type="docker">quay.io/qiime2/core:2023.5</container> + <container type="docker">quay.io/qiime2/amplicon:2024.2</container> </requirements> <version_command>q2galaxy version phylogeny</version_command> <command detect_errors="exit_code">q2galaxy run phylogeny raxml_rapid_bootstrap '$inputs'</command> <configfiles> - <inputs name="inputs" data_style="paths"/> + <inputs name="inputs" data_style="staging_path_and_source_path"/> </configfiles> <inputs> <param name="alignment" type="data" format="qza" label="alignment: FeatureData[AlignedSequence]" help="[required] Aligned sequences to be used for phylogenetic reconstruction."> @@ -31,7 +31,6 @@ <param name="seed" type="integer" optional="true" label="seed: Int" help="[optional] Random number seed for the parsimony starting tree. This allows you to reproduce tree results. If not supplied then one will be randomly chosen."/> <param name="rapid_bootstrap_seed" type="integer" optional="true" label="rapid_bootstrap_seed: Int" help="[optional] Specify a random seed for rapid bootstrapping. This allows you to reproduce rapid bootstrap results. If not supplied then one will be randomly chosen."/> <param name="bootstrap_replicates" type="integer" min="10" value="100" label="bootstrap_replicates: Int % Range(10, None)" help="[default: 100] The number of bootstrap searches to perform."/> - <param name="n_threads" type="integer" min="1" value="1" label="n_threads: Int % Range(1, None)" help="[default: 1] The number of threads to use for multithreaded processing. Using more than one thread will enable the PTHREADS version of RAxML."/> <param name="raxml_version" type="select" label="raxml_version: Str % Choices('Standard', 'SSE3', 'AVX2')" display="radio"> <option value="Standard" selected="true">Standard</option> <option value="SSE3">SSE3</option>