Mercurial > repos > q2d2 > qiime2__rescript__cull_seqs

changeset 2:ae9cfce668bf draft default tip

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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__rescript commit 5f71b597c9495eae67a447744fded834f56ca1f7
author q2d2
date Wed, 30 Oct 2024 19:54:46 +0000
parents b9948cab53e8
children
files qiime2__rescript__cull_seqs.xml
diffstat 1 files changed, 8 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/qiime2__rescript__cull_seqs.xml	Mon Jun 03 23:31:15 2024 +0000
+++ b/qiime2__rescript__cull_seqs.xml	Wed Oct 30 19:54:46 2024 +0000
@@ -6,14 +6,17 @@
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2024.5.0)
+    q2galaxy (version: 2024.10.0)
 for:
-    qiime2 (version: 2024.5.0)
+    qiime2 (version: 2024.10.1)
 -->
-<tool name="qiime2 rescript cull-seqs" id="qiime2__rescript__cull_seqs" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 rescript cull-seqs" id="qiime2__rescript__cull_seqs" version="2024.10.0+q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
     <description>Removes sequences that contain at least the specified number of degenerate bases and/or homopolymers of a given length.</description>
+    <xrefs>
+        <xref type="bio.tools">qiime2</xref>
+    </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2024.5</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
     </requirements>
     <version_command>q2galaxy version rescript</version_command>
     <command detect_errors="exit_code">q2galaxy run rescript cull_seqs '$inputs'</command>
@@ -23,8 +26,8 @@
     <inputs>
         <param name="sequences" type="data" format="qza" label="sequences: FeatureData[Sequence | RNASequence]" help="[required]  DNA or RNA Sequences to be screened for removal based on degenerate base and homopolymer screening criteria.">
             <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="FeatureData[Sequence]"/>
                 <filter type="add_value" value="FeatureData[RNASequence]"/>
-                <filter type="add_value" value="FeatureData[Sequence]"/>
             </options>
             <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[RNASequence]', 'FeatureData[Sequence]']</validator>
         </param>