annotate qiime2__rescript__reverse_transcribe.xml @ 6:2d959e26d7e5 draft default tip

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__rescript commit 36ec48f8c55799a0c963733df13da30f19b1bdf3

<?xml version='1.0' encoding='utf-8'?>
<!--
Copyright (c) 2026, QIIME 2 development team.

Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
-->
<!--
This tool was automatically generated by:
    q2galaxy (version: 2026.1.0)
for:
    qiime2 (version: 2026.1.0)
-->
<tool name="qiime2 rescript reverse-transcribe" id="qiime2__rescript__reverse_transcribe" version="2026.1.0+q2galaxy.2026.1.0" profile="22.05" license="BSD-3-Clause">
    <description>Reverse transcribe RNA to DNA sequences.</description>
    <xrefs>
        <xref type="bio.tools">qiime2</xref>
    </xrefs>
    <requirements>
        <container type="docker">quay.io/qiime2/amplicon:2026.1</container>
    </requirements>
    <version_command>q2galaxy version rescript</version_command>
    <command detect_errors="exit_code">q2galaxy run rescript reverse_transcribe '$inputs'</command>
    <configfiles>
        <inputs name="inputs" data_style="staging_path_and_source_path"/>
    </configfiles>
    <inputs>
        <param name="rna_sequences" type="data" format="qza" label="rna_sequences: FeatureData[AlignedRNASequence¹ | RNASequence²]" help="[required]  RNA Sequences to reverse transcribe to DNA.">
            <options options_filter_attribute="metadata.semantic_type">
                <filter type="add_value" value="FeatureData[RNASequence]"/>
                <filter type="add_value" value="FeatureData[AlignedRNASequence]"/>
            </options>
            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[AlignedRNASequence]', 'FeatureData[RNASequence]']</validator>
        </param>
    </inputs>
    <outputs>
        <data name="dna_sequences" format="qza" label="${tool.name} on ${on_string}: dna_sequences.qza" from_work_dir="dna_sequences.qza"/>
    </outputs>
    <tests/>
    <help>
QIIME 2: rescript reverse-transcribe
====================================
Reverse transcribe RNA to DNA sequences.


Outputs:
--------
:dna_sequences.qza: Reverse-transcribed DNA sequences.

|  

Description:
------------
Reverse transcribe RNA to DNA sequences. Accepts aligned or unaligned RNA sequences as input.


|  

</help>
    <citations>
        <citation type="doi">10.1371/journal.pcbi.1009581</citation>
        <citation type="doi">10.1038/s41587-019-0209-9</citation>
    </citations>
</tool>