changeset 3:115e5387e46a draft default tip

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__sample_classifier commit 389df0134cd0763dcf02aac6e623fc15f8861c1e

--- a/qiime2__sample_classifier__metatable.xml	Thu Jun 08 19:52:23 2023 +0000
+++ b/qiime2__sample_classifier__metatable.xml	Thu Apr 25 21:26:56 2024 +0000
@@ -1,24 +1,24 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2023, QIIME 2 development team.
+Copyright (c) 2024, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2023.5.0)
+    q2galaxy (version: 2024.2.1)
 for:
-    qiime2 (version: 2023.5.1)
+    qiime2 (version: 2024.2.0)
 -->
-<tool name="qiime2 sample-classifier metatable" id="qiime2__sample_classifier__metatable" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 sample-classifier metatable" id="qiime2__sample_classifier__metatable" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
     <description>Convert (and merge) positive numeric metadata (in)to feature table.</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2023.5</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
     </requirements>
     <version_command>q2galaxy version sample_classifier</version_command>
     <command detect_errors="exit_code">q2galaxy run sample_classifier metatable '$inputs'</command>
     <configfiles>
-        <inputs name="inputs" data_style="paths"/>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
     </configfiles>
     <inputs>
         <repeat name="metadata" min="1" help="[required]  Metadata file to convert to feature table." title="metadata: Metadata">
@@ -36,11 +36,14 @@
             </conditional>
         </repeat>
         <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
-            <param name="table" type="data" format="qza" optional="true" label="table: FeatureTable[Frequency]" help="[optional]  Feature table containing all features that should be used for target prediction.">
+            <param name="table" type="data" format="qza" optional="true" label="table: FeatureTable[Frequency | RelativeFrequency | PresenceAbsence | Composition]" help="[optional]  Feature table containing all features that should be used for target prediction.">
                 <options options_filter_attribute="metadata.semantic_type">
+                    <filter type="add_value" value="FeatureTable[Composition]"/>
                     <filter type="add_value" value="FeatureTable[Frequency]"/>
+                    <filter type="add_value" value="FeatureTable[RelativeFrequency]"/>
+                    <filter type="add_value" value="FeatureTable[PresenceAbsence]"/>
                 </options>
-                <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]']</validator>
+                <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Composition]', 'FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]', 'FeatureTable[RelativeFrequency]']</validator>
             </param>
             <param name="missing_samples" type="select" label="missing_samples: Str % Choices('error', 'ignore')" display="radio">
                 <option value="error">error</option>