annotate qiime2__stats__plot_rainclouds.xml @ 0:0699c24331f4 draft default tip

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7

<?xml version='1.0' encoding='utf-8'?>
<!--
Copyright (c) 2024, QIIME 2 development team.

Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
-->
<!--
This tool was automatically generated by:
    q2galaxy (version: 2024.10.0)
for:
    qiime2 (version: 2024.10.1)
-->
<tool name="qiime2 stats plot-rainclouds" id="qiime2__stats__plot_rainclouds" version="0+unknown-q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
    <description>Raincloud plots</description>
    <xrefs>
        <xref type="bio.tools">qiime2</xref>
    </xrefs>
    <requirements>
        <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
    </requirements>
    <version_command>q2galaxy version stats</version_command>
    <command detect_errors="exit_code">q2galaxy run stats plot_rainclouds '$inputs'</command>
    <configfiles>
        <inputs name="inputs" data_style="staging_path_and_source_path"/>
    </configfiles>
    <inputs>
        <param name="data" type="data" format="qza" label="data: Dist1D[Multi | Ordered | Unordered | NestedOrdered | NestedUnordered, Matched | Independent]" help="[required]  The group distributions to plot.">
            <options options_filter_attribute="metadata.semantic_type">
                <filter type="add_value" value="Dist1D[NestedOrdered, Matched]"/>
                <filter type="add_value" value="Dist1D[Ordered, Matched]"/>
                <filter type="add_value" value="Dist1D[Ordered, Independent]"/>
                <filter type="add_value" value="Dist1D[Multi, Independent]"/>
                <filter type="add_value" value="Dist1D[NestedOrdered, Independent]"/>
                <filter type="add_value" value="Dist1D[Multi, Matched]"/>
                <filter type="add_value" value="Dist1D[Unordered, Matched]"/>
                <filter type="add_value" value="Dist1D[Unordered, Independent]"/>
                <filter type="add_value" value="Dist1D[NestedUnordered, Matched]"/>
                <filter type="add_value" value="Dist1D[NestedUnordered, Independent]"/>
            </options>
            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Dist1D[Multi, Independent]', 'Dist1D[Multi, Matched]', 'Dist1D[NestedOrdered, Independent]', 'Dist1D[NestedOrdered, Matched]', 'Dist1D[NestedUnordered, Independent]', 'Dist1D[NestedUnordered, Matched]', 'Dist1D[Ordered, Independent]', 'Dist1D[Ordered, Matched]', 'Dist1D[Unordered, Independent]', 'Dist1D[Unordered, Matched]']</validator>
        </param>
        <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
            <param name="stats" type="data" format="qza" optional="true" label="stats: StatsTable[Pairwise]" help="[optional]  Statistical tests to display.">
                <options options_filter_attribute="metadata.semantic_type">
                    <filter type="add_value" value="StatsTable[Pairwise]"/>
                </options>
                <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['StatsTable[Pairwise]']</validator>
            </param>
        </section>
    </inputs>
    <outputs>
        <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
    </outputs>
    <tests>
        <test>
            <param name="data" value="plot_rainclouds.test0.dist.qza" ftype="qza"/>
            <output name="visualization" ftype="qzv">
                <assert_contents>
                    <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml">
                        <has_line_matching expression="type: Visualization"/>
                    </has_archive_member>
                </assert_contents>
            </output>
        </test>
    </tests>
    <help>
QIIME 2: stats plot-rainclouds
==============================
Raincloud plots


Outputs:
--------
:visualization.qzv: &lt;no description&gt;

|  

Description:
------------
Plot raincloud distributions for each group.

Examples:
---------

plot_rainclouds
***************
Using the ``qiime2 stats plot-rainclouds`` tool:
 #. Set *"data"* to ``#: dist.qza``
 #. Press the ``Execute`` button.

Once completed, for the new entry in your history, use the ``Edit`` button to set the name as follows:
 (Renaming is optional, but it will make any subsequent steps easier to complete.)

 .. list-table::
    :align: left
    :header-rows: 1

    * - History Name
      - *"Name"* to set (be sure to press ``Save``)
    * - ``#: qiime2 stats plot-rainclouds [...] : visualization.qzv``
      - ``raincloud-plot.qzv``


|  

</help>
    <citations>
        <citation type="doi">10.1038/s41587-019-0209-9</citation>
    </citations>
</tool>