diff qiime2__stats__plot_rainclouds.xml @ 0:0699c24331f4 draft default tip

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__stats commit 5f71b597c9495eae67a447744fded834f56ca1f7

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+++ b/qiime2__stats__plot_rainclouds.xml	Wed Oct 30 19:58:01 2024 +0000
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+<?xml version='1.0' encoding='utf-8'?>
+<!--
+Copyright (c) 2024, QIIME 2 development team.
+
+Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
+-->
+<!--
+This tool was automatically generated by:
+    q2galaxy (version: 2024.10.0)
+for:
+    qiime2 (version: 2024.10.1)
+-->
+<tool name="qiime2 stats plot-rainclouds" id="qiime2__stats__plot_rainclouds" version="0+unknown-q2galaxy.2024.10.0" profile="22.05" license="BSD-3-Clause">
+    <description>Raincloud plots</description>
+    <xrefs>
+        <xref type="bio.tools">qiime2</xref>
+    </xrefs>
+    <requirements>
+        <container type="docker">quay.io/qiime2/amplicon:2024.10</container>
+    </requirements>
+    <version_command>q2galaxy version stats</version_command>
+    <command detect_errors="exit_code">q2galaxy run stats plot_rainclouds '$inputs'</command>
+    <configfiles>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
+    </configfiles>
+    <inputs>
+        <param name="data" type="data" format="qza" label="data: Dist1D[Multi | Ordered | Unordered | NestedOrdered | NestedUnordered, Matched | Independent]" help="[required]  The group distributions to plot.">
+            <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="Dist1D[NestedOrdered, Matched]"/>
+                <filter type="add_value" value="Dist1D[Ordered, Matched]"/>
+                <filter type="add_value" value="Dist1D[Ordered, Independent]"/>
+                <filter type="add_value" value="Dist1D[Multi, Independent]"/>
+                <filter type="add_value" value="Dist1D[NestedOrdered, Independent]"/>
+                <filter type="add_value" value="Dist1D[Multi, Matched]"/>
+                <filter type="add_value" value="Dist1D[Unordered, Matched]"/>
+                <filter type="add_value" value="Dist1D[Unordered, Independent]"/>
+                <filter type="add_value" value="Dist1D[NestedUnordered, Matched]"/>
+                <filter type="add_value" value="Dist1D[NestedUnordered, Independent]"/>
+            </options>
+            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['Dist1D[Multi, Independent]', 'Dist1D[Multi, Matched]', 'Dist1D[NestedOrdered, Independent]', 'Dist1D[NestedOrdered, Matched]', 'Dist1D[NestedUnordered, Independent]', 'Dist1D[NestedUnordered, Matched]', 'Dist1D[Ordered, Independent]', 'Dist1D[Ordered, Matched]', 'Dist1D[Unordered, Independent]', 'Dist1D[Unordered, Matched]']</validator>
+        </param>
+        <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
+            <param name="stats" type="data" format="qza" optional="true" label="stats: StatsTable[Pairwise]" help="[optional]  Statistical tests to display.">
+                <options options_filter_attribute="metadata.semantic_type">
+                    <filter type="add_value" value="StatsTable[Pairwise]"/>
+                </options>
+                <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['StatsTable[Pairwise]']</validator>
+            </param>
+        </section>
+    </inputs>
+    <outputs>
+        <data name="visualization" format="qzv" label="${tool.name} on ${on_string}: visualization.qzv" from_work_dir="visualization.qzv"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="data" value="plot_rainclouds.test0.dist.qza" ftype="qza"/>
+            <output name="visualization" ftype="qzv">
+                <assert_contents>
+                    <has_archive_member path="[0-9a-f]{8}-[0-9a-f]{4}-[4][0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}\/metadata.yaml">
+                        <has_line_matching expression="type: Visualization"/>
+                    </has_archive_member>
+                </assert_contents>
+            </output>
+        </test>
+    </tests>
+    <help>
+QIIME 2: stats plot-rainclouds
+==============================
+Raincloud plots
+
+
+Outputs:
+--------
+:visualization.qzv: &lt;no description&gt;
+
+|  
+
+Description:
+------------
+Plot raincloud distributions for each group.
+
+Examples:
+---------
+
+plot_rainclouds
+***************
+Using the ``qiime2 stats plot-rainclouds`` tool:
+ #. Set *"data"* to ``#: dist.qza``
+ #. Press the ``Execute`` button.
+
+Once completed, for the new entry in your history, use the ``Edit`` button to set the name as follows:
+ (Renaming is optional, but it will make any subsequent steps easier to complete.)
+
+ .. list-table::
+    :align: left
+    :header-rows: 1
+
+    * - History Name
+      - *"Name"* to set (be sure to press ``Save``)
+    * - ``#: qiime2 stats plot-rainclouds [...] : visualization.qzv``
+      - ``raincloud-plot.qzv``
+
+
+|  
+
+</help>
+    <citations>
+        <citation type="doi">10.1038/s41587-019-0209-9</citation>
+    </citations>
+</tool>