Mercurial > repos > q2d2 > qiime2__taxa__filter_table
changeset 4:a8972ecf15c1 draft default tip
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__taxa commit c7e80dcda727ce63b42aa8a946e9330310929797
| author | q2d2 |
|---|---|
| date | Mon, 03 Jun 2024 23:32:22 +0000 |
| parents | e4872ac2c683 |
| children | |
| files | qiime2__taxa__filter_table.xml test-data/barplot.test0.table.qza test-data/barplot.test0.taxonomy.qza test-data/collapse.test0.table.qza test-data/collapse.test0.taxonomy.qza |
| diffstat | 5 files changed, 7 insertions(+), 6 deletions(-) [+] |
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--- a/qiime2__taxa__filter_table.xml Thu Apr 25 21:27:14 2024 +0000 +++ b/qiime2__taxa__filter_table.xml Mon Jun 03 23:32:22 2024 +0000 @@ -6,14 +6,14 @@ --> <!-- This tool was automatically generated by: - q2galaxy (version: 2024.2.1) + q2galaxy (version: 2024.5.0) for: - qiime2 (version: 2024.2.0) + qiime2 (version: 2024.5.0) --> -<tool name="qiime2 taxa filter-table" id="qiime2__taxa__filter_table" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 taxa filter-table" id="qiime2__taxa__filter_table" version="2024.5.0+q2galaxy.2024.5.0" profile="22.05" license="BSD-3-Clause"> <description>Taxonomy-based feature table filter.</description> <requirements> - <container type="docker">quay.io/qiime2/amplicon:2024.2</container> + <container type="docker">quay.io/qiime2/amplicon:2024.5</container> </requirements> <version_command>q2galaxy version taxa</version_command> <command detect_errors="exit_code">q2galaxy run taxa filter_table '$inputs'</command> @@ -21,11 +21,12 @@ <inputs name="inputs" data_style="staging_path_and_source_path"/> </configfiles> <inputs> - <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency]" help="[required] Feature table to be filtered."> + <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency¹ | PresenceAbsence²]" help="[required] Feature table to be filtered."> <options options_filter_attribute="metadata.semantic_type"> <filter type="add_value" value="FeatureTable[Frequency]"/> + <filter type="add_value" value="FeatureTable[PresenceAbsence]"/> </options> - <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]']</validator> + <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureTable[Frequency]', 'FeatureTable[PresenceAbsence]']</validator> </param> <param name="taxonomy" type="data" format="qza" label="taxonomy: FeatureData[Taxonomy]" help="[required] Taxonomic annotations for features in the provided feature table. All features in the feature table must have a corresponding taxonomic annotation. Taxonomic annotations for features that are not present in the feature table will be ignored."> <options options_filter_attribute="metadata.semantic_type">