Mercurial > repos > q2d2 > qiime2__vsearch__cluster_features_de_novo
changeset 3:a7e23c72f344 draft default tip
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__vsearch commit 389df0134cd0763dcf02aac6e623fc15f8861c1e
| author | q2d2 |
|---|---|
| date | Thu, 25 Apr 2024 21:27:48 +0000 |
| parents | 397c1be954c2 |
| children | |
| files | qiime2__vsearch__cluster_features_de_novo.xml |
| diffstat | 1 files changed, 10 insertions(+), 7 deletions(-) [+] |
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--- a/qiime2__vsearch__cluster_features_de_novo.xml Thu Jun 08 19:53:07 2023 +0000 +++ b/qiime2__vsearch__cluster_features_de_novo.xml Thu Apr 25 21:27:48 2024 +0000 @@ -1,24 +1,24 @@ <?xml version='1.0' encoding='utf-8'?> <!-- -Copyright (c) 2023, QIIME 2 development team. +Copyright (c) 2024, QIIME 2 development team. Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) --> <!-- This tool was automatically generated by: - q2galaxy (version: 2023.5.0) + q2galaxy (version: 2024.2.1) for: - qiime2 (version: 2023.5.1) + qiime2 (version: 2024.2.0) --> -<tool name="qiime2 vsearch cluster-features-de-novo" id="qiime2__vsearch__cluster_features_de_novo" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause"> +<tool name="qiime2 vsearch cluster-features-de-novo" id="qiime2__vsearch__cluster_features_de_novo" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause"> <description>De novo clustering of features.</description> <requirements> - <container type="docker">quay.io/qiime2/core:2023.5</container> + <container type="docker">quay.io/qiime2/amplicon:2024.2</container> </requirements> <version_command>q2galaxy version vsearch</version_command> <command detect_errors="exit_code">q2galaxy run vsearch cluster_features_de_novo '$inputs'</command> <configfiles> - <inputs name="inputs" data_style="paths"/> + <inputs name="inputs" data_style="staging_path_and_source_path"/> </configfiles> <inputs> <param name="sequences" type="data" format="qza" label="sequences: FeatureData[Sequence]" help="[required] The sequences corresponding to the features in table."> @@ -35,7 +35,10 @@ </param> <param name="perc_identity" type="float" min="1e-06" max="1" value="" label="perc_identity: Float % Range(0, 1, inclusive_start=False, inclusive_end=True)" help="[required] The percent identity at which clustering should be performed. This parameter maps to vsearch's --id parameter."/> <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options"> - <param name="threads" type="integer" min="0" max="256" value="1" label="threads: Int % Range(0, 256, inclusive_end=True)" help="[default: 1] The number of threads to use for computation. Passing 0 will launch one thread per CPU core."/> + <param name="strand" type="select" label="strand: Str % Choices('plus', 'both')" display="radio"> + <option value="plus" selected="true">plus</option> + <option value="both">both</option> + </param> </section> </inputs> <outputs>