Mercurial > repos > q2d2 > qiime2_core__tools__import
annotate qiime2_core__tools__import.xml @ 1:5d9a36073ed6 draft
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
author | q2d2 |
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date | Fri, 13 Jan 2023 23:02:20 +0000 |
parents | 1370f8d6e95b |
children | 18c6b2b6740f |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1 <?xml version='1.0' encoding='utf-8'?> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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2 <!-- |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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3 Copyright (c) 2023, QIIME 2 development team. |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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4 |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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5 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause) |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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6 --> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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7 <!-- |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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8 This tool was automatically generated by: |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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9 q2galaxy (version: 2022.11.1) |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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10 for: |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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11 qiime2 (version: 2022.11.1) |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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12 --> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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13 <tool name="qiime2 tools import" id="qiime2_core__tools__import" version="2022.11.1+dist.h2bda5906.2" profile="22.05" license="BSD-3-Clause"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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14 <description>Import data into a QIIME 2 artifact</description> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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15 <requirements> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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16 <container type="docker">quay.io/qiime2/core:2022.11</container> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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17 </requirements> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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18 <command detect_errors="exit_code">q2galaxy run tools import '$inputs'</command> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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19 <configfiles> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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20 <configfile name="inputs"><% |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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21 # This is an exercise in cheating the Cheetah |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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22 import json |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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23 |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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24 def expand_collection(collection): |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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25 # All of this work is just to extract the |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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26 # element identifier AND the path |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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27 return [dict(name=d.element_identifier, data=stringify(d)) |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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28 for d in collection] |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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29 |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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30 def stringify(obj): |
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31 if type(obj) is dict: |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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32 new = {} |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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33 for key, value in obj.items(): |
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34 if (key.startswith('__') and key.endswith('__') |
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35 and not key.startswith('__q2galaxy__')): |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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36 continue |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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37 new[str(key)] = stringify(value) |
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38 |
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39 return new |
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40 elif type(obj) is list: |
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41 return [stringify(x) for x in obj] |
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42 elif type(obj.__str__) is not type(object().__str__): # noqa |
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43 # There is an associated __str__ which will be used for |
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44 # "normal" templating, it looks like a strange check because |
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45 # it really is, we're testing for method-wrapper as a sign |
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46 # of non-implementation |
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47 return str(obj) |
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48 elif obj.is_collection: |
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49 return expand_collection(obj) |
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50 else: |
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51 raise NotImplementedError("Unrecognized situation in q2galaxy") |
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52 |
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53 dataset = self.getVar('import_root') |
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54 inputs = stringify(dataset) |
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55 write(json.dumps(inputs)) |
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56 %></configfile> |
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57 </configfiles> |
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58 <inputs> |
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59 <conditional name="import_root"> |
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60 <param name="type" type="select" label="Type of data to import:"> |
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61 <option value="None">Select a QIIME 2 type to import.</option> |
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62 <option value="Bowtie2Index">Bowtie2Index</option> |
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63 <option value="DeblurStats">DeblurStats</option> |
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64 <option value="DistanceMatrix">DistanceMatrix</option> |
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65 <option value="EMPPairedEndSequences">EMPPairedEndSequences</option> |
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66 <option value="EMPSingleEndSequences">EMPSingleEndSequences</option> |
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67 <option value="ErrorCorrectionDetails">ErrorCorrectionDetails</option> |
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68 <option value="FeatureData__ob__AlignedProteinSequence__cb__">FeatureData[AlignedProteinSequence]</option> |
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69 <option value="FeatureData__ob__AlignedRNASequence__cb__">FeatureData[AlignedRNASequence]</option> |
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70 <option value="FeatureData__ob__AlignedSequence__cb__">FeatureData[AlignedSequence]</option> |
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71 <option value="FeatureData__ob__BLAST6__cb__">FeatureData[BLAST6]</option> |
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72 <option value="FeatureData__ob__DifferentialAbundance__cb__">FeatureData[DifferentialAbundance]</option> |
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73 <option value="FeatureData__ob__Differential__cb__">FeatureData[Differential]</option> |
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74 <option value="FeatureData__ob__Importance__cb__">FeatureData[Importance]</option> |
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75 <option value="FeatureData__ob__PairedEndRNASequence__cb__">FeatureData[PairedEndRNASequence]</option> |
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76 <option value="FeatureData__ob__PairedEndSequence__cb__">FeatureData[PairedEndSequence]</option> |
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77 <option value="FeatureData__ob__ProteinSequence__cb__">FeatureData[ProteinSequence]</option> |
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78 <option value="FeatureData__ob__RNASequence__cb__">FeatureData[RNASequence]</option> |
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79 <option value="FeatureData__ob__Sequence__cb__">FeatureData[Sequence]</option> |
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80 <option value="FeatureData__ob__Taxonomy__cb__">FeatureData[Taxonomy]</option> |
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81 <option value="FeatureTable__ob__Balance__cb__">FeatureTable[Balance]</option> |
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82 <option value="FeatureTable__ob__Composition__cb__">FeatureTable[Composition]</option> |
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83 <option value="FeatureTable__ob__Design__cb__">FeatureTable[Design]</option> |
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84 <option value="FeatureTable__ob__Frequency__cb__">FeatureTable[Frequency]</option> |
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85 <option value="FeatureTable__ob__PercentileNormalized__cb__">FeatureTable[PercentileNormalized]</option> |
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86 <option value="FeatureTable__ob__PresenceAbsence__cb__">FeatureTable[PresenceAbsence]</option> |
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87 <option value="FeatureTable__ob__RelativeFrequency__cb__">FeatureTable[RelativeFrequency]</option> |
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88 <option value="Hierarchy">Hierarchy</option> |
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89 <option value="MultiplexedPairedEndBarcodeInSequence">MultiplexedPairedEndBarcodeInSequence</option> |
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90 <option value="MultiplexedSingleEndBarcodeInSequence">MultiplexedSingleEndBarcodeInSequence</option> |
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91 <option value="PCoAResults">PCoAResults</option> |
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92 <option value="Phylogeny__ob__Rooted__cb__">Phylogeny[Rooted]</option> |
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93 <option value="Phylogeny__ob__Unrooted__cb__">Phylogeny[Unrooted]</option> |
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94 <option value="Placements">Placements</option> |
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95 <option value="ProcrustesStatistics">ProcrustesStatistics</option> |
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96 <option value="QualityFilterStats">QualityFilterStats</option> |
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97 <option value="RawSequences">RawSequences</option> |
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98 <option value="SampleData__ob__AlphaDiversity__cb__">SampleData[AlphaDiversity]</option> |
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99 <option value="SampleData__ob__ArtificialGrouping__cb__">SampleData[ArtificialGrouping]</option> |
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100 <option value="SampleData__ob__BooleanSeries__cb__">SampleData[BooleanSeries]</option> |
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101 <option value="SampleData__ob__ClassifierPredictions__cb__">SampleData[ClassifierPredictions]</option> |
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102 <option value="SampleData__ob__DADA2Stats__cb__">SampleData[DADA2Stats]</option> |
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103 <option value="SampleData__ob__FirstDifferences__cb__">SampleData[FirstDifferences]</option> |
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104 <option value="SampleData__ob__JoinedSequencesWithQuality__cb__">SampleData[JoinedSequencesWithQuality]</option> |
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105 <option value="SampleData__ob__PairedEndSequencesWithQuality__cb__">SampleData[PairedEndSequencesWithQuality]</option> |
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106 <option value="SampleData__ob__Probabilities__cb__">SampleData[Probabilities]</option> |
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107 <option value="SampleData__ob__RegressorPredictions__cb__">SampleData[RegressorPredictions]</option> |
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108 <option value="SampleData__ob__SequencesWithQuality__cb__">SampleData[SequencesWithQuality]</option> |
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109 <option value="SampleData__ob__Sequences__cb__">SampleData[Sequences]</option> |
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110 <option value="SampleData__ob__TrueTargets__cb__">SampleData[TrueTargets]</option> |
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111 <option value="SampleEstimator__ob__Classifier__cb__">SampleEstimator[Classifier]</option> |
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112 <option value="SampleEstimator__ob__Regressor__cb__">SampleEstimator[Regressor]</option> |
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113 <option value="SeppReferenceDatabase">SeppReferenceDatabase</option> |
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114 <option value="TaxonomicClassifier">TaxonomicClassifier</option> |
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115 <option value="UchimeStats">UchimeStats</option> |
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116 </param> |
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117 <when value="None"/> |
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118 <when value="Bowtie2Index"> |
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119 <conditional name="__q2galaxy__GUI__cond__format__"> |
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120 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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121 <option value="Bowtie2IndexDirFmt" selected="true">Bowtie2 Index Directory Format</option> |
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122 </param> |
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123 <when value="Bowtie2IndexDirFmt"> |
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124 <section name="import_idx1" expanded="true" title="Import idx1"> |
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125 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+(?‹!\.rev)\.1\.bt2l?"> |
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126 <validator type="regex" message="This filename doesn't match the regex.">.+(?<!\.rev)\.1\.bt2l?</validator> |
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127 </param> |
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128 <param name="data" type="data" format="data" help="This data should be formatted as a Bowtie2IndexFileFormat. See the documentation below for more information."/> |
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129 </section> |
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130 <section name="import_idx2" expanded="true" title="Import idx2"> |
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131 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+(?‹!\.rev)\.2\.bt2l?"> |
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132 <validator type="regex" message="This filename doesn't match the regex.">.+(?<!\.rev)\.2\.bt2l?</validator> |
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133 </param> |
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134 <param name="data" type="data" format="data" help="This data should be formatted as a Bowtie2IndexFileFormat. See the documentation below for more information."/> |
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135 </section> |
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136 <section name="import_ref3" expanded="true" title="Import ref3"> |
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137 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+\.3\.bt2l?"> |
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138 <validator type="regex" message="This filename doesn't match the regex.">.+\.3\.bt2l?</validator> |
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139 </param> |
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140 <param name="data" type="data" format="data" help="This data should be formatted as a Bowtie2IndexFileFormat. See the documentation below for more information."/> |
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141 </section> |
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142 <section name="import_ref4" expanded="true" title="Import ref4"> |
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143 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+\.4\.bt2l?"> |
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144 <validator type="regex" message="This filename doesn't match the regex.">.+\.4\.bt2l?</validator> |
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145 </param> |
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146 <param name="data" type="data" format="data" help="This data should be formatted as a Bowtie2IndexFileFormat. See the documentation below for more information."/> |
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147 </section> |
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148 <section name="import_rev1" expanded="true" title="Import rev1"> |
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149 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+\.rev\.1\.bt2l?"> |
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150 <validator type="regex" message="This filename doesn't match the regex.">.+\.rev\.1\.bt2l?</validator> |
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151 </param> |
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152 <param name="data" type="data" format="data" help="This data should be formatted as a Bowtie2IndexFileFormat. See the documentation below for more information."/> |
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153 </section> |
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154 <section name="import_rev2" expanded="true" title="Import rev2"> |
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155 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+\.rev\.2\.bt2l?"> |
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156 <validator type="regex" message="This filename doesn't match the regex.">.+\.rev\.2\.bt2l?</validator> |
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157 </param> |
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158 <param name="data" type="data" format="data" help="This data should be formatted as a Bowtie2IndexFileFormat. See the documentation below for more information."/> |
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159 </section> |
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160 </when> |
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161 </conditional> |
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162 </when> |
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163 <when value="DeblurStats"> |
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164 <conditional name="__q2galaxy__GUI__cond__format__"> |
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165 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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166 <option value="DeblurStatsFmt" selected="true">Deblur Stats Format</option> |
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167 </param> |
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168 <when value="DeblurStatsFmt"> |
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169 <section name="import" expanded="true" title="Import"> |
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170 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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171 <param name="data" type="data" format="data" help="This data should be formatted as a DeblurStatsFmt. See the documentation below for more information."/> |
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172 </section> |
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173 </when> |
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174 </conditional> |
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175 </when> |
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176 <when value="DistanceMatrix"> |
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177 <conditional name="__q2galaxy__GUI__cond__format__"> |
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178 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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179 <option value="LSMatFormat" selected="true">LS Mat Format</option> |
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180 </param> |
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181 <when value="LSMatFormat"> |
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182 <section name="import" expanded="true" title="Import"> |
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183 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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184 <param name="data" type="data" format="data" help="This data should be formatted as a LSMatFormat. See the documentation below for more information."/> |
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185 </section> |
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186 </when> |
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187 </conditional> |
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188 </when> |
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189 <when value="EMPPairedEndSequences"> |
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190 <conditional name="__q2galaxy__GUI__cond__format__"> |
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191 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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192 <option value="EMPPairedEndCasavaDirFmt" selected="false">EMP Paired End Casava Directory Format</option> |
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193 <option value="EMPPairedEndDirFmt" selected="true">EMP Paired End Directory Format</option> |
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194 </param> |
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195 <when value="EMPPairedEndCasavaDirFmt"> |
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196 <section name="import_forward" expanded="true" title="Import forward"> |
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197 <param name="name" type="text" value="Undetermined_S0_L001_R1_001.fastq.gz" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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198 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
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199 </section> |
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200 <section name="import_reverse" expanded="true" title="Import reverse"> |
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201 <param name="name" type="text" value="Undetermined_S0_L001_R2_001.fastq.gz" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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202 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
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203 </section> |
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204 <section name="import_barcodes" expanded="true" title="Import barcodes"> |
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205 <param name="name" type="text" value="Undetermined_S0_L001_I1_001.fastq.gz" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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206 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
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207 </section> |
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208 </when> |
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209 <when value="EMPPairedEndDirFmt"> |
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210 <section name="import_forward" expanded="true" title="Import forward"> |
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211 <param name="name" type="text" value="forward.fastq.gz" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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212 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
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213 </section> |
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214 <section name="import_reverse" expanded="true" title="Import reverse"> |
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215 <param name="name" type="text" value="reverse.fastq.gz" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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216 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
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217 </section> |
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218 <section name="import_barcodes" expanded="true" title="Import barcodes"> |
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219 <param name="name" type="text" value="barcodes.fastq.gz" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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220 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
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221 </section> |
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222 </when> |
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223 </conditional> |
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224 </when> |
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225 <when value="EMPSingleEndSequences"> |
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226 <conditional name="__q2galaxy__GUI__cond__format__"> |
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227 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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228 <option value="EMPSingleEndCasavaDirFmt" selected="false">EMP Single End Casava Directory Format</option> |
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229 <option value="EMPSingleEndDirFmt" selected="true">EMP Single End Directory Format</option> |
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230 </param> |
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231 <when value="EMPSingleEndCasavaDirFmt"> |
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232 <section name="import_sequences" expanded="true" title="Import sequences"> |
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233 <param name="name" type="text" value="Undetermined_S0_L001_R1_001.fastq.gz" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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234 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
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235 </section> |
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236 <section name="import_barcodes" expanded="true" title="Import barcodes"> |
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237 <param name="name" type="text" value="Undetermined_S0_L001_I1_001.fastq.gz" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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238 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
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239 </section> |
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240 </when> |
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241 <when value="EMPSingleEndDirFmt"> |
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242 <section name="import_sequences" expanded="true" title="Import sequences"> |
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243 <param name="name" type="text" value="sequences.fastq.gz" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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244 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
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245 </section> |
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246 <section name="import_barcodes" expanded="true" title="Import barcodes"> |
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247 <param name="name" type="text" value="barcodes.fastq.gz" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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248 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
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249 </section> |
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250 </when> |
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251 </conditional> |
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252 </when> |
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253 <when value="ErrorCorrectionDetails"> |
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254 <conditional name="__q2galaxy__GUI__cond__format__"> |
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255 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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256 <option value="ErrorCorrectionDetailsFmt" selected="true">Error Correction Details Format</option> |
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257 </param> |
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258 <when value="ErrorCorrectionDetailsFmt"> |
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259 <section name="import" expanded="true" title="Import"> |
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260 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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261 <param name="data" type="data" format="data" help="This data should be formatted as a ErrorCorrectionDetailsFmt. See the documentation below for more information."/> |
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262 </section> |
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263 </when> |
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264 </conditional> |
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265 </when> |
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266 <when value="FeatureData__ob__AlignedProteinSequence__cb__"> |
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267 <conditional name="__q2galaxy__GUI__cond__format__"> |
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268 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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269 <option value="AlignedProteinFASTAFormat" selected="true">Aligned Protein FASTA Format</option> |
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270 </param> |
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271 <when value="AlignedProteinFASTAFormat"> |
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272 <section name="import" expanded="true" title="Import"> |
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273 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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274 <param name="data" type="data" format="data" help="This data should be formatted as a AlignedProteinFASTAFormat. See the documentation below for more information."/> |
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275 </section> |
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276 </when> |
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277 </conditional> |
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278 </when> |
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279 <when value="FeatureData__ob__AlignedRNASequence__cb__"> |
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280 <conditional name="__q2galaxy__GUI__cond__format__"> |
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281 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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282 <option value="AlignedRNAFASTAFormat" selected="true">Aligned RNAFASTA Format</option> |
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283 <option value="MixedCaseAlignedRNAFASTAFormat" selected="false">Mixed Case Aligned RNAFASTA Format</option> |
0
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284 </param> |
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285 <when value="AlignedRNAFASTAFormat"> |
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286 <section name="import" expanded="true" title="Import"> |
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287 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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288 <param name="data" type="data" format="data" help="This data should be formatted as a AlignedRNAFASTAFormat. See the documentation below for more information."/> |
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289 </section> |
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290 </when> |
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291 <when value="MixedCaseAlignedRNAFASTAFormat"> |
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292 <section name="import" expanded="true" title="Import"> |
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293 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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294 <param name="data" type="data" format="data" help="This data should be formatted as a MixedCaseAlignedRNAFASTAFormat. See the documentation below for more information."/> |
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295 </section> |
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296 </when> |
0
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297 </conditional> |
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298 </when> |
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299 <when value="FeatureData__ob__AlignedSequence__cb__"> |
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300 <conditional name="__q2galaxy__GUI__cond__format__"> |
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301 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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302 <option value="AlignedDNAFASTAFormat" selected="true">Aligned DNAFASTA Format</option> |
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303 <option value="MixedCaseAlignedDNAFASTAFormat" selected="false">Mixed Case Aligned DNAFASTA Format</option> |
0
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304 </param> |
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305 <when value="AlignedDNAFASTAFormat"> |
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306 <section name="import" expanded="true" title="Import"> |
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307 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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308 <param name="data" type="data" format="data" help="This data should be formatted as a AlignedDNAFASTAFormat. See the documentation below for more information."/> |
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309 </section> |
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310 </when> |
1
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311 <when value="MixedCaseAlignedDNAFASTAFormat"> |
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312 <section name="import" expanded="true" title="Import"> |
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313 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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314 <param name="data" type="data" format="data" help="This data should be formatted as a MixedCaseAlignedDNAFASTAFormat. See the documentation below for more information."/> |
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315 </section> |
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316 </when> |
0
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317 </conditional> |
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318 </when> |
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319 <when value="FeatureData__ob__BLAST6__cb__"> |
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320 <conditional name="__q2galaxy__GUI__cond__format__"> |
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321 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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322 <option value="BLAST6Format" selected="true">BLAST6 Format</option> |
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323 </param> |
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324 <when value="BLAST6Format"> |
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325 <section name="import" expanded="true" title="Import"> |
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326 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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327 <param name="data" type="data" format="data" help="This data should be formatted as a BLAST6Format. See the documentation below for more information."/> |
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328 </section> |
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329 </when> |
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330 </conditional> |
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331 </when> |
1
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332 <when value="FeatureData__ob__DifferentialAbundance__cb__"> |
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333 <conditional name="__q2galaxy__GUI__cond__format__"> |
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334 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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335 <option value="DataLoafPackageDirFmt" selected="true">Data Loaf Package Directory Format</option> |
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336 </param> |
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337 <when value="DataLoafPackageDirFmt"> |
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338 <section name="import_data_slices" expanded="true" title="Import data_slices"> |
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339 <conditional name="__q2galaxy__GUI__cond__data_slices__"> |
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340 <param name="__q2galaxy__GUI__select__picker__" type="select" label="Select a mechanism"> |
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341 <option value="collection" selected="true">Use collection to import</option> |
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342 <option value="individual">Associate individual files</option> |
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343 </param> |
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344 <when value="collection"> |
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345 <param name="elements" type="data_collection" help="This data should be formatted as a FrictionlessCSVFileFormat. See the documentation below for more information. Elements must match regex: .+\.csv"/> |
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346 <conditional name="__q2galaxy__GUI__cond__add_ext__"> |
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347 <param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one."> |
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348 <option value="no">No, use element identifiers as is</option> |
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349 <option value="yes">Yes, append an extension</option> |
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350 </param> |
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351 <when value="yes"> |
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352 <param name="ext" type="text" label="Extension to append (e.g. '.fastq.gz')"/> |
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353 </when> |
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354 <when value="no"/> |
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355 </conditional> |
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356 </when> |
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357 <when value="individual"> |
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358 <repeat name="elements" min="1" title="Add Elements"> |
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359 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+\.csv"> |
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360 <validator type="regex" message="This filename doesn't match the regex.">.+\.csv</validator> |
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361 </param> |
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362 <param name="data" type="data" format="data" help="This data should be formatted as a FrictionlessCSVFileFormat. See the documentation below for more information."/> |
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363 </repeat> |
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364 </when> |
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365 </conditional> |
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366 </section> |
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367 <section name="import_nutrition_facts" expanded="true" title="Import nutrition_facts"> |
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368 <param name="name" type="text" value="datapackage.json" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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369 <param name="data" type="data" format="data" help="This data should be formatted as a DataPackageSchemaFileFormat. See the documentation below for more information."/> |
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370 </section> |
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371 </when> |
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372 </conditional> |
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373 </when> |
0
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374 <when value="FeatureData__ob__Differential__cb__"> |
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375 <conditional name="__q2galaxy__GUI__cond__format__"> |
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376 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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377 <option value="DifferentialFormat" selected="true">Differential Format</option> |
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378 </param> |
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379 <when value="DifferentialFormat"> |
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380 <section name="import" expanded="true" title="Import"> |
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381 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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382 <param name="data" type="data" format="data" help="This data should be formatted as a DifferentialFormat. See the documentation below for more information."/> |
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383 </section> |
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384 </when> |
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385 </conditional> |
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386 </when> |
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387 <when value="FeatureData__ob__Importance__cb__"> |
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388 <conditional name="__q2galaxy__GUI__cond__format__"> |
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389 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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390 <option value="ImportanceFormat" selected="true">Importance Format</option> |
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391 </param> |
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392 <when value="ImportanceFormat"> |
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393 <section name="import" expanded="true" title="Import"> |
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394 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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395 <param name="data" type="data" format="data" help="This data should be formatted as a ImportanceFormat. See the documentation below for more information."/> |
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396 </section> |
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397 </when> |
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398 </conditional> |
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399 </when> |
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400 <when value="FeatureData__ob__PairedEndRNASequence__cb__"> |
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401 <conditional name="__q2galaxy__GUI__cond__format__"> |
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402 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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403 <option value="PairedRNASequencesDirectoryFormat" selected="true">Paired RNA Sequences Directory Format</option> |
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404 </param> |
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405 <when value="PairedRNASequencesDirectoryFormat"> |
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406 <section name="import_left_rna_sequences" expanded="true" title="Import left_rna_sequences"> |
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407 <param name="name" type="text" value="left-rna-sequences.fasta" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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408 <param name="data" type="data" format="data" help="This data should be formatted as a RNAFASTAFormat. See the documentation below for more information."/> |
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409 </section> |
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410 <section name="import_right_rna_sequences" expanded="true" title="Import right_rna_sequences"> |
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411 <param name="name" type="text" value="right-rna-sequences.fasta" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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412 <param name="data" type="data" format="data" help="This data should be formatted as a RNAFASTAFormat. See the documentation below for more information."/> |
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413 </section> |
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414 </when> |
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415 </conditional> |
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416 </when> |
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417 <when value="FeatureData__ob__PairedEndSequence__cb__"> |
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418 <conditional name="__q2galaxy__GUI__cond__format__"> |
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419 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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420 <option value="PairedDNASequencesDirectoryFormat" selected="true">Paired DNA Sequences Directory Format</option> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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421 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
422 <when value="PairedDNASequencesDirectoryFormat"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
423 <section name="import_left_dna_sequences" expanded="true" title="Import left_dna_sequences"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
424 <param name="name" type="text" value="left-dna-sequences.fasta" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
425 <param name="data" type="data" format="data" help="This data should be formatted as a DNAFASTAFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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426 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
427 <section name="import_right_dna_sequences" expanded="true" title="Import right_dna_sequences"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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428 <param name="name" type="text" value="right-dna-sequences.fasta" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
429 <param name="data" type="data" format="data" help="This data should be formatted as a DNAFASTAFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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430 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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431 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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432 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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433 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
434 <when value="FeatureData__ob__ProteinSequence__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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435 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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436 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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437 <option value="ProteinFASTAFormat" selected="true">Protein FASTA Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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438 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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439 <when value="ProteinFASTAFormat"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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440 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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441 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
442 <param name="data" type="data" format="data" help="This data should be formatted as a ProteinFASTAFormat. See the documentation below for more information."/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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443 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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444 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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445 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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446 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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447 <when value="FeatureData__ob__RNASequence__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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448 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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449 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
450 <option value="MixedCaseRNAFASTAFormat" selected="false">Mixed Case RNAFASTA Format</option> |
0
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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451 <option value="RNAFASTAFormat" selected="true">RNAFASTA Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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452 </param> |
1
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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diff
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|
453 <when value="MixedCaseRNAFASTAFormat"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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454 <section name="import" expanded="true" title="Import"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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455 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
456 <param name="data" type="data" format="data" help="This data should be formatted as a MixedCaseRNAFASTAFormat. See the documentation below for more information."/> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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457 </section> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
458 </when> |
0
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
459 <when value="RNAFASTAFormat"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
460 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
461 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
462 <param name="data" type="data" format="data" help="This data should be formatted as a RNAFASTAFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
463 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
464 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
465 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
466 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
467 <when value="FeatureData__ob__Sequence__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
468 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
469 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
470 <option value="DNAFASTAFormat" selected="true">DNAFASTA Format</option> |
1
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
471 <option value="MixedCaseDNAFASTAFormat" selected="false">Mixed Case DNAFASTA Format</option> |
0
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
472 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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473 <when value="DNAFASTAFormat"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
474 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
475 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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476 <param name="data" type="data" format="data" help="This data should be formatted as a DNAFASTAFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
477 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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478 </when> |
1
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
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|
479 <when value="MixedCaseDNAFASTAFormat"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
480 <section name="import" expanded="true" title="Import"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
481 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
482 <param name="data" type="data" format="data" help="This data should be formatted as a MixedCaseDNAFASTAFormat. See the documentation below for more information."/> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
483 </section> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
484 </when> |
0
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
485 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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486 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
487 <when value="FeatureData__ob__Taxonomy__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
488 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
489 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
490 <option value="BIOMV210Format" selected="false">BIOMV210 Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
491 <option value="HeaderlessTSVTaxonomyFormat" selected="false">Headerless TSV Taxonomy Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
492 <option value="TSVTaxonomyFormat" selected="true">TSV Taxonomy Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
493 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
494 <when value="BIOMV210Format"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
495 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
496 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
497 <param name="data" type="data" format="data" help="This data should be formatted as a BIOMV210Format. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
498 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
499 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
500 <when value="HeaderlessTSVTaxonomyFormat"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
501 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
502 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
503 <param name="data" type="data" format="data" help="This data should be formatted as a HeaderlessTSVTaxonomyFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
504 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
505 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
506 <when value="TSVTaxonomyFormat"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
507 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
508 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
509 <param name="data" type="data" format="data" help="This data should be formatted as a TSVTaxonomyFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
510 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
511 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
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512 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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513 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
514 <when value="FeatureTable__ob__Balance__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
515 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
516 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
517 <option value="BIOMV100Format" selected="false">BIOMV100 Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
518 <option value="BIOMV210Format" selected="true">BIOMV210 Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
519 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
520 <when value="BIOMV100Format"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
521 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
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522 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
523 <param name="data" type="data" format="data" help="This data should be formatted as a BIOMV100Format. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
524 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
525 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
526 <when value="BIOMV210Format"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
527 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
528 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
529 <param name="data" type="data" format="data" help="This data should be formatted as a BIOMV210Format. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
530 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
531 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
532 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
533 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
534 <when value="FeatureTable__ob__Composition__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
535 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
536 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
537 <option value="BIOMV100Format" selected="false">BIOMV100 Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
538 <option value="BIOMV210Format" selected="true">BIOMV210 Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
539 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
540 <when value="BIOMV100Format"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
541 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
542 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
543 <param name="data" type="data" format="data" help="This data should be formatted as a BIOMV100Format. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
544 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
545 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
546 <when value="BIOMV210Format"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
547 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
548 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
549 <param name="data" type="data" format="data" help="This data should be formatted as a BIOMV210Format. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
550 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
551 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
552 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
553 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
554 <when value="FeatureTable__ob__Design__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
555 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
556 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
557 <option value="BIOMV100Format" selected="false">BIOMV100 Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
558 <option value="BIOMV210Format" selected="true">BIOMV210 Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
559 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
560 <when value="BIOMV100Format"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
561 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
562 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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563 <param name="data" type="data" format="data" help="This data should be formatted as a BIOMV100Format. See the documentation below for more information."/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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564 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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565 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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566 <when value="BIOMV210Format"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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567 <section name="import" expanded="true" title="Import"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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568 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
569 <param name="data" type="data" format="data" help="This data should be formatted as a BIOMV210Format. See the documentation below for more information."/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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570 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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571 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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572 </conditional> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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573 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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574 <when value="FeatureTable__ob__Frequency__cb__"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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575 <conditional name="__q2galaxy__GUI__cond__format__"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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576 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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577 <option value="BIOMV100Format" selected="false">BIOMV100 Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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578 <option value="BIOMV210Format" selected="true">BIOMV210 Format</option> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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579 </param> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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580 <when value="BIOMV100Format"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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581 <section name="import" expanded="true" title="Import"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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582 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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583 <param name="data" type="data" format="data" help="This data should be formatted as a BIOMV100Format. See the documentation below for more information."/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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584 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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585 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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586 <when value="BIOMV210Format"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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587 <section name="import" expanded="true" title="Import"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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588 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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589 <param name="data" type="data" format="data" help="This data should be formatted as a BIOMV210Format. See the documentation below for more information."/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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590 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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591 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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592 </conditional> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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593 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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594 <when value="FeatureTable__ob__PercentileNormalized__cb__"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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595 <conditional name="__q2galaxy__GUI__cond__format__"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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596 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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597 <option value="BIOMV100Format" selected="false">BIOMV100 Format</option> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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598 <option value="BIOMV210Format" selected="true">BIOMV210 Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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599 </param> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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600 <when value="BIOMV100Format"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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601 <section name="import" expanded="true" title="Import"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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602 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
603 <param name="data" type="data" format="data" help="This data should be formatted as a BIOMV100Format. See the documentation below for more information."/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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604 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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605 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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606 <when value="BIOMV210Format"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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607 <section name="import" expanded="true" title="Import"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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608 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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609 <param name="data" type="data" format="data" help="This data should be formatted as a BIOMV210Format. See the documentation below for more information."/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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610 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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611 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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612 </conditional> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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613 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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614 <when value="FeatureTable__ob__PresenceAbsence__cb__"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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615 <conditional name="__q2galaxy__GUI__cond__format__"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
616 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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617 <option value="BIOMV100Format" selected="false">BIOMV100 Format</option> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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618 <option value="BIOMV210Format" selected="true">BIOMV210 Format</option> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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619 </param> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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620 <when value="BIOMV100Format"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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621 <section name="import" expanded="true" title="Import"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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622 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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623 <param name="data" type="data" format="data" help="This data should be formatted as a BIOMV100Format. See the documentation below for more information."/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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624 </section> |
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625 </when> |
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626 <when value="BIOMV210Format"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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627 <section name="import" expanded="true" title="Import"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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628 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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629 <param name="data" type="data" format="data" help="This data should be formatted as a BIOMV210Format. See the documentation below for more information."/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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630 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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631 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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632 </conditional> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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633 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
634 <when value="FeatureTable__ob__RelativeFrequency__cb__"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
635 <conditional name="__q2galaxy__GUI__cond__format__"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
636 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
637 <option value="BIOMV100Format" selected="false">BIOMV100 Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
638 <option value="BIOMV210Format" selected="true">BIOMV210 Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
639 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
640 <when value="BIOMV100Format"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
641 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
642 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
643 <param name="data" type="data" format="data" help="This data should be formatted as a BIOMV100Format. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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644 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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645 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
646 <when value="BIOMV210Format"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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647 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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648 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
649 <param name="data" type="data" format="data" help="This data should be formatted as a BIOMV210Format. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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650 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
651 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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652 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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653 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
654 <when value="Hierarchy"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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655 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
656 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
657 <option value="NewickFormat" selected="true">Newick Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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658 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
659 <when value="NewickFormat"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
660 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
661 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
662 <param name="data" type="data" format="data" help="This data should be formatted as a NewickFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
663 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
664 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
665 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
666 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
667 <when value="MultiplexedPairedEndBarcodeInSequence"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
668 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
669 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
670 <option value="MultiplexedPairedEndBarcodeInSequenceDirFmt" selected="true">Multiplexed Paired End Barcode In Sequence Directory Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
671 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
672 <when value="MultiplexedPairedEndBarcodeInSequenceDirFmt"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
673 <section name="import_forward_sequences" expanded="true" title="Import forward_sequences"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
674 <param name="name" type="text" value="forward.fastq.gz" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
675 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
676 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
677 <section name="import_reverse_sequences" expanded="true" title="Import reverse_sequences"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
678 <param name="name" type="text" value="reverse.fastq.gz" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
679 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
680 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
681 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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682 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
683 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
684 <when value="MultiplexedSingleEndBarcodeInSequence"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
685 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
686 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
687 <option value="FastqGzFormat" selected="true">Fastq Gz Format</option> |
1
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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diff
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|
688 <option value="MultiplexedFastaQualDirFmt" selected="false">Multiplexed Fasta Qual Directory Format</option> |
0
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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689 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
690 <when value="FastqGzFormat"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
691 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
692 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
693 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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694 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
695 </when> |
1
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
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diff
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|
696 <when value="MultiplexedFastaQualDirFmt"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
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|
697 <section name="import_sequences" expanded="true" title="Import sequences"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
698 <param name="name" type="text" value="reads.fasta" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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diff
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|
699 <param name="data" type="data" format="data" help="This data should be formatted as a DNAFASTAFormat. See the documentation below for more information."/> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
700 </section> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
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diff
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|
701 <section name="import_quality" expanded="true" title="Import quality"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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diff
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|
702 <param name="name" type="text" value="reads.qual" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
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diff
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|
703 <param name="data" type="data" format="data" help="This data should be formatted as a QualFormat. See the documentation below for more information."/> |
5d9a36073ed6
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diff
changeset
|
704 </section> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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diff
changeset
|
705 </when> |
0
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
706 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
707 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
708 <when value="PCoAResults"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
709 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
710 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
711 <option value="OrdinationFormat" selected="true">Ordination Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
712 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
713 <when value="OrdinationFormat"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
714 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
715 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
716 <param name="data" type="data" format="data" help="This data should be formatted as a OrdinationFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
717 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
718 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
719 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
720 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
721 <when value="Phylogeny__ob__Rooted__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
722 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
723 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
724 <option value="NewickFormat" selected="true">Newick Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
725 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
726 <when value="NewickFormat"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
727 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
728 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
729 <param name="data" type="data" format="data" help="This data should be formatted as a NewickFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
730 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
731 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
732 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
733 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
734 <when value="Phylogeny__ob__Unrooted__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
735 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
736 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
737 <option value="NewickFormat" selected="true">Newick Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
738 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
739 <when value="NewickFormat"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
740 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
741 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
742 <param name="data" type="data" format="data" help="This data should be formatted as a NewickFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
743 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
744 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
745 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
746 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
747 <when value="Placements"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
748 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
749 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
750 <option value="PlacementsFormat" selected="true">Placements Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
751 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
752 <when value="PlacementsFormat"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
753 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
754 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
755 <param name="data" type="data" format="data" help="This data should be formatted as a PlacementsFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
756 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
757 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
758 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
759 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
760 <when value="ProcrustesStatistics"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
761 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
762 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
763 <option value="ProcrustesStatisticsFmt" selected="true">Procrustes Statistics Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
764 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
765 <when value="ProcrustesStatisticsFmt"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
766 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
767 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
768 <param name="data" type="data" format="data" help="This data should be formatted as a ProcrustesStatisticsFmt. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
769 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
770 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
771 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
772 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
773 <when value="QualityFilterStats"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
774 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
775 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
776 <option value="QualityFilterStatsFmt" selected="true">Quality Filter Stats Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
777 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
778 <when value="QualityFilterStatsFmt"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
779 <section name="import" expanded="true" title="Import"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
780 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
781 <param name="data" type="data" format="data" help="This data should be formatted as a QualityFilterStatsFmt. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
782 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
783 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
784 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
785 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
786 <when value="RawSequences"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
787 <conditional name="__q2galaxy__GUI__cond__format__"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
788 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
789 <option value="EMPSingleEndCasavaDirFmt" selected="false">EMP Single End Casava Directory Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
790 <option value="EMPSingleEndDirFmt" selected="true">EMP Single End Directory Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
791 </param> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
792 <when value="EMPSingleEndCasavaDirFmt"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
793 <section name="import_sequences" expanded="true" title="Import sequences"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
794 <param name="name" type="text" value="Undetermined_S0_L001_R1_001.fastq.gz" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
795 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
796 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
797 <section name="import_barcodes" expanded="true" title="Import barcodes"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
798 <param name="name" type="text" value="Undetermined_S0_L001_I1_001.fastq.gz" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
799 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
800 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
801 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
802 <when value="EMPSingleEndDirFmt"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
803 <section name="import_sequences" expanded="true" title="Import sequences"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
804 <param name="name" type="text" value="sequences.fastq.gz" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
805 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
806 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
807 <section name="import_barcodes" expanded="true" title="Import barcodes"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
808 <param name="name" type="text" value="barcodes.fastq.gz" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
809 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
810 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
811 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
812 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
813 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
814 <when value="SampleData__ob__AlphaDiversity__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
815 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
816 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
817 <option value="AlphaDiversityFormat" selected="true">Alpha Diversity Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
818 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
819 <when value="AlphaDiversityFormat"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
820 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
821 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
822 <param name="data" type="data" format="data" help="This data should be formatted as a AlphaDiversityFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
823 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
824 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
825 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
826 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
827 <when value="SampleData__ob__ArtificialGrouping__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
828 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
829 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
830 <option value="ArtificialGroupingFormat" selected="true">Artificial Grouping Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
831 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
832 <when value="ArtificialGroupingFormat"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
833 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
834 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
835 <param name="data" type="data" format="data" help="This data should be formatted as a ArtificialGroupingFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
836 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
837 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
838 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
839 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
840 <when value="SampleData__ob__BooleanSeries__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
841 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
842 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
843 <option value="BooleanSeriesFormat" selected="true">Boolean Series Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
844 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
845 <when value="BooleanSeriesFormat"> |
1370f8d6e95b
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846 <section name="import" expanded="true" title="Import"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
847 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
848 <param name="data" type="data" format="data" help="This data should be formatted as a BooleanSeriesFormat. See the documentation below for more information."/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
849 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
850 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
851 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
852 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
853 <when value="SampleData__ob__ClassifierPredictions__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
854 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
855 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
856 <option value="PredictionsFormat" selected="true">Predictions Format</option> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
857 </param> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
858 <when value="PredictionsFormat"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
859 <section name="import" expanded="true" title="Import"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
860 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
861 <param name="data" type="data" format="data" help="This data should be formatted as a PredictionsFormat. See the documentation below for more information."/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
862 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
863 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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864 </conditional> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
865 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
866 <when value="SampleData__ob__DADA2Stats__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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867 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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868 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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869 <option value="DADA2StatsFormat" selected="true">DADA2 Stats Format</option> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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870 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
871 <when value="DADA2StatsFormat"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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872 <section name="import" expanded="true" title="Import"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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873 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
874 <param name="data" type="data" format="data" help="This data should be formatted as a DADA2StatsFormat. See the documentation below for more information."/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
875 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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876 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
877 </conditional> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
878 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
879 <when value="SampleData__ob__FirstDifferences__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
880 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
881 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
882 <option value="FirstDifferencesFormat" selected="true">First Differences Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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883 </param> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
884 <when value="FirstDifferencesFormat"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
885 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
886 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
887 <param name="data" type="data" format="data" help="This data should be formatted as a FirstDifferencesFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
888 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
889 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
890 </conditional> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
891 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
892 <when value="SampleData__ob__JoinedSequencesWithQuality__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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893 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
894 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
895 <option value="CasavaOneEightLanelessPerSampleDirFmt" selected="false">Casava One Eight Laneless Per Sample Directory Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
896 <option value="CasavaOneEightSingleLanePerSampleDirFmt" selected="false">Casava One Eight Single Lane Per Sample Directory Format</option> |
1
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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0
diff
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|
897 <option value="SampleIdIndexedSingleEndPerSampleDirFmt" selected="false">Sample Id Indexed Single End Per Sample Directory Format</option> |
0
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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898 <option value="SingleEndFastqManifestPhred33" selected="false">Single End Fastq Manifest Phred33</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
899 <option value="SingleEndFastqManifestPhred33V2" selected="false">Single End Fastq Manifest Phred33V2</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
900 <option value="SingleEndFastqManifestPhred64" selected="false">Single End Fastq Manifest Phred64</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
901 <option value="SingleEndFastqManifestPhred64V2" selected="false">Single End Fastq Manifest Phred64V2</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
902 <option value="SingleLanePerSamplePairedEndFastqDirFmt" selected="false">Single Lane Per Sample Paired End Fastq Directory Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
903 <option value="SingleLanePerSampleSingleEndFastqDirFmt" selected="true">Single Lane Per Sample Single End Fastq Directory Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
904 </param> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
905 <when value="CasavaOneEightLanelessPerSampleDirFmt"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
906 <section name="import_sequences" expanded="true" title="Import sequences"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
907 <conditional name="__q2galaxy__GUI__cond__sequences__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
908 <param name="__q2galaxy__GUI__select__picker__" type="select" label="Select a mechanism"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
909 <option value="collection" selected="true">Use collection to import</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
910 <option value="individual">Associate individual files</option> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
911 </param> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
912 <when value="collection"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
913 <param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_R[12]_001\.fastq\.gz"/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
914 <conditional name="__q2galaxy__GUI__cond__add_ext__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
915 <param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one."> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
916 <option value="no">No, use element identifiers as is</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
917 <option value="yes">Yes, append an extension</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
918 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
919 <when value="yes"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
920 <param name="ext" type="text" label="Extension to append (e.g. '.fastq.gz')"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
921 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
922 <when value="no"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
923 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
924 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
925 <when value="individual"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
926 <repeat name="elements" min="1" title="Add Elements"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
927 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+_.+_R[12]_001\.fastq\.gz"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
928 <validator type="regex" message="This filename doesn't match the regex.">.+_.+_R[12]_001\.fastq\.gz</validator> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
929 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
930 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
931 </repeat> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
932 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
933 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
934 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
935 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
936 <when value="CasavaOneEightSingleLanePerSampleDirFmt"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
937 <section name="import_sequences" expanded="true" title="Import sequences"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
938 <conditional name="__q2galaxy__GUI__cond__sequences__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
939 <param name="__q2galaxy__GUI__select__picker__" type="select" label="Select a mechanism"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
940 <option value="collection" selected="true">Use collection to import</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
941 <option value="individual">Associate individual files</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
942 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
943 <when value="collection"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
944 <param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
945 <conditional name="__q2galaxy__GUI__cond__add_ext__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
946 <param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one."> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
947 <option value="no">No, use element identifiers as is</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
948 <option value="yes">Yes, append an extension</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
949 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
950 <when value="yes"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
951 <param name="ext" type="text" label="Extension to append (e.g. '.fastq.gz')"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
952 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
953 <when value="no"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
954 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
955 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
956 <when value="individual"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
957 <repeat name="elements" min="1" title="Add Elements"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
958 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
959 <validator type="regex" message="This filename doesn't match the regex.">.+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz</validator> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
960 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
961 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
962 </repeat> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
963 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
964 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
965 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
966 </when> |
1
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
967 <when value="SampleIdIndexedSingleEndPerSampleDirFmt"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
968 <section name="import_sequences" expanded="true" title="Import sequences"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
969 <conditional name="__q2galaxy__GUI__cond__sequences__"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
970 <param name="__q2galaxy__GUI__select__picker__" type="select" label="Select a mechanism"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
971 <option value="collection" selected="true">Use collection to import</option> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
972 <option value="individual">Associate individual files</option> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
973 </param> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
974 <when value="collection"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
975 <param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+\.fastq\.gz"/> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
976 <conditional name="__q2galaxy__GUI__cond__add_ext__"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
977 <param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one."> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
978 <option value="no">No, use element identifiers as is</option> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
979 <option value="yes">Yes, append an extension</option> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
980 </param> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
981 <when value="yes"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
982 <param name="ext" type="text" label="Extension to append (e.g. '.fastq.gz')"/> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
983 </when> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
984 <when value="no"/> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
985 </conditional> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
986 </when> |
5d9a36073ed6
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987 <when value="individual"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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988 <repeat name="elements" min="1" title="Add Elements"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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989 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+\.fastq\.gz"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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990 <validator type="regex" message="This filename doesn't match the regex.">.+\.fastq\.gz</validator> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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991 </param> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
992 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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993 </repeat> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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994 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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995 </conditional> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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996 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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997 </when> |
0
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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998 <when value="SingleEndFastqManifestPhred33"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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999 <section name="import" expanded="true" title="Import"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1000 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1001 <param name="data" type="data" format="data" help="This data should be formatted as a SingleEndFastqManifestPhred33. See the documentation below for more information."/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1002 </section> |
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1003 </when> |
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1004 <when value="SingleEndFastqManifestPhred33V2"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1005 <section name="import" expanded="true" title="Import"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1006 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1007 <param name="data" type="data" format="data" help="This data should be formatted as a SingleEndFastqManifestPhred33V2. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1008 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1009 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1010 <when value="SingleEndFastqManifestPhred64"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1011 <section name="import" expanded="true" title="Import"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1012 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1013 <param name="data" type="data" format="data" help="This data should be formatted as a SingleEndFastqManifestPhred64. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1014 </section> |
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1015 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1016 <when value="SingleEndFastqManifestPhred64V2"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1017 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1018 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1019 <param name="data" type="data" format="data" help="This data should be formatted as a SingleEndFastqManifestPhred64V2. See the documentation below for more information."/> |
1370f8d6e95b
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|
1020 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1021 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1022 <when value="SingleLanePerSamplePairedEndFastqDirFmt"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1023 <section name="import_sequences" expanded="true" title="Import sequences"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1024 <conditional name="__q2galaxy__GUI__cond__sequences__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1025 <param name="__q2galaxy__GUI__select__picker__" type="select" label="Select a mechanism"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1026 <option value="collection" selected="true">Use collection to import</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1027 <option value="individual">Associate individual files</option> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1028 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1029 <when value="collection"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1030 <param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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|
1031 <conditional name="__q2galaxy__GUI__cond__add_ext__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1032 <param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one."> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1033 <option value="no">No, use element identifiers as is</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1034 <option value="yes">Yes, append an extension</option> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1035 </param> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1036 <when value="yes"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1037 <param name="ext" type="text" label="Extension to append (e.g. '.fastq.gz')"/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1038 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1039 <when value="no"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1040 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1041 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1042 <when value="individual"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1043 <repeat name="elements" min="1" title="Add Elements"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1044 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1045 <validator type="regex" message="This filename doesn't match the regex.">.+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz</validator> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1046 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1047 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1048 </repeat> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1049 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1050 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1051 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1052 <section name="import_manifest" expanded="true" title="Import manifest"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1053 <param name="name" type="text" value="MANIFEST" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1054 <param name="data" type="data" format="data" help="This data should be formatted as a FastqManifestFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1055 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1056 <section name="import_metadata" expanded="true" title="Import metadata"> |
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1057 <param name="name" type="text" value="metadata.yml" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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1058 <param name="data" type="data" format="data" help="This data should be formatted as a YamlFormat. See the documentation below for more information."/> |
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1059 </section> |
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|
1060 </when> |
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|
1061 <when value="SingleLanePerSampleSingleEndFastqDirFmt"> |
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1062 <section name="import_sequences" expanded="true" title="Import sequences"> |
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1063 <conditional name="__q2galaxy__GUI__cond__sequences__"> |
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|
1064 <param name="__q2galaxy__GUI__select__picker__" type="select" label="Select a mechanism"> |
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1065 <option value="collection" selected="true">Use collection to import</option> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1066 <option value="individual">Associate individual files</option> |
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|
1067 </param> |
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1068 <when value="collection"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1069 <param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/> |
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|
1070 <conditional name="__q2galaxy__GUI__cond__add_ext__"> |
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|
1071 <param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one."> |
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|
1072 <option value="no">No, use element identifiers as is</option> |
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1073 <option value="yes">Yes, append an extension</option> |
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1074 </param> |
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1075 <when value="yes"> |
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1076 <param name="ext" type="text" label="Extension to append (e.g. '.fastq.gz')"/> |
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1077 </when> |
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|
1078 <when value="no"/> |
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1079 </conditional> |
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1080 </when> |
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1081 <when value="individual"> |
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1082 <repeat name="elements" min="1" title="Add Elements"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1083 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"> |
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1084 <validator type="regex" message="This filename doesn't match the regex.">.+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz</validator> |
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1085 </param> |
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1086 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
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1087 </repeat> |
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1088 </when> |
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1089 </conditional> |
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1090 </section> |
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1091 <section name="import_manifest" expanded="true" title="Import manifest"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1092 <param name="name" type="text" value="MANIFEST" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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1093 <param name="data" type="data" format="data" help="This data should be formatted as a FastqManifestFormat. See the documentation below for more information."/> |
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|
1094 </section> |
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|
1095 <section name="import_metadata" expanded="true" title="Import metadata"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1096 <param name="name" type="text" value="metadata.yml" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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1097 <param name="data" type="data" format="data" help="This data should be formatted as a YamlFormat. See the documentation below for more information."/> |
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1098 </section> |
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|
1099 </when> |
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1100 </conditional> |
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|
1101 </when> |
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|
1102 <when value="SampleData__ob__PairedEndSequencesWithQuality__cb__"> |
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1103 <conditional name="__q2galaxy__GUI__cond__format__"> |
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1104 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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1105 <option value="CasavaOneEightLanelessPerSampleDirFmt" selected="false">Casava One Eight Laneless Per Sample Directory Format</option> |
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|
1106 <option value="CasavaOneEightSingleLanePerSampleDirFmt" selected="false">Casava One Eight Single Lane Per Sample Directory Format</option> |
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1107 <option value="PairedEndFastqManifestPhred33" selected="false">Paired End Fastq Manifest Phred33</option> |
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1108 <option value="PairedEndFastqManifestPhred33V2" selected="false">Paired End Fastq Manifest Phred33V2</option> |
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1109 <option value="PairedEndFastqManifestPhred64" selected="false">Paired End Fastq Manifest Phred64</option> |
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1110 <option value="PairedEndFastqManifestPhred64V2" selected="false">Paired End Fastq Manifest Phred64V2</option> |
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1111 <option value="SingleLanePerSamplePairedEndFastqDirFmt" selected="true">Single Lane Per Sample Paired End Fastq Directory Format</option> |
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1112 </param> |
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1113 <when value="CasavaOneEightLanelessPerSampleDirFmt"> |
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1114 <section name="import_sequences" expanded="true" title="Import sequences"> |
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1115 <conditional name="__q2galaxy__GUI__cond__sequences__"> |
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1116 <param name="__q2galaxy__GUI__select__picker__" type="select" label="Select a mechanism"> |
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1117 <option value="collection" selected="true">Use collection to import</option> |
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1118 <option value="individual">Associate individual files</option> |
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1119 </param> |
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1120 <when value="collection"> |
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1121 <param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_R[12]_001\.fastq\.gz"/> |
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|
1122 <conditional name="__q2galaxy__GUI__cond__add_ext__"> |
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|
1123 <param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one."> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1124 <option value="no">No, use element identifiers as is</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1125 <option value="yes">Yes, append an extension</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1126 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1127 <when value="yes"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1128 <param name="ext" type="text" label="Extension to append (e.g. '.fastq.gz')"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1129 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1130 <when value="no"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1131 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1132 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1133 <when value="individual"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1134 <repeat name="elements" min="1" title="Add Elements"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1135 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+_.+_R[12]_001\.fastq\.gz"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1136 <validator type="regex" message="This filename doesn't match the regex.">.+_.+_R[12]_001\.fastq\.gz</validator> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
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|
1137 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1138 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1139 </repeat> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1140 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1141 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1142 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1143 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1144 <when value="CasavaOneEightSingleLanePerSampleDirFmt"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1145 <section name="import_sequences" expanded="true" title="Import sequences"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1146 <conditional name="__q2galaxy__GUI__cond__sequences__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1147 <param name="__q2galaxy__GUI__select__picker__" type="select" label="Select a mechanism"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1148 <option value="collection" selected="true">Use collection to import</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1149 <option value="individual">Associate individual files</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1150 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1151 <when value="collection"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1152 <param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1153 <conditional name="__q2galaxy__GUI__cond__add_ext__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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|
1154 <param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one."> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1155 <option value="no">No, use element identifiers as is</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1156 <option value="yes">Yes, append an extension</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1157 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1158 <when value="yes"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
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|
1159 <param name="ext" type="text" label="Extension to append (e.g. '.fastq.gz')"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1160 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1161 <when value="no"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1162 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1163 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1164 <when value="individual"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1165 <repeat name="elements" min="1" title="Add Elements"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1166 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1167 <validator type="regex" message="This filename doesn't match the regex.">.+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz</validator> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1168 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
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|
1169 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1170 </repeat> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1171 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1172 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1173 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1174 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1175 <when value="PairedEndFastqManifestPhred33"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1176 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1177 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1178 <param name="data" type="data" format="data" help="This data should be formatted as a PairedEndFastqManifestPhred33. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1179 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1180 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1181 <when value="PairedEndFastqManifestPhred33V2"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1182 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1183 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1184 <param name="data" type="data" format="data" help="This data should be formatted as a PairedEndFastqManifestPhred33V2. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1185 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1186 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1187 <when value="PairedEndFastqManifestPhred64"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1188 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1189 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1190 <param name="data" type="data" format="data" help="This data should be formatted as a PairedEndFastqManifestPhred64. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
1191 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1192 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
1193 <when value="PairedEndFastqManifestPhred64V2"> |
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1194 <section name="import" expanded="true" title="Import"> |
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1195 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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|
1196 <param name="data" type="data" format="data" help="This data should be formatted as a PairedEndFastqManifestPhred64V2. See the documentation below for more information."/> |
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1197 </section> |
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1198 </when> |
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1199 <when value="SingleLanePerSamplePairedEndFastqDirFmt"> |
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1200 <section name="import_sequences" expanded="true" title="Import sequences"> |
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1201 <conditional name="__q2galaxy__GUI__cond__sequences__"> |
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1202 <param name="__q2galaxy__GUI__select__picker__" type="select" label="Select a mechanism"> |
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1203 <option value="collection" selected="true">Use collection to import</option> |
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1204 <option value="individual">Associate individual files</option> |
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1205 </param> |
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1206 <when value="collection"> |
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1207 <param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/> |
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1208 <conditional name="__q2galaxy__GUI__cond__add_ext__"> |
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1209 <param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one."> |
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1210 <option value="no">No, use element identifiers as is</option> |
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1211 <option value="yes">Yes, append an extension</option> |
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1212 </param> |
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|
1213 <when value="yes"> |
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|
1214 <param name="ext" type="text" label="Extension to append (e.g. '.fastq.gz')"/> |
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1215 </when> |
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|
1216 <when value="no"/> |
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1217 </conditional> |
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1218 </when> |
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1219 <when value="individual"> |
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1220 <repeat name="elements" min="1" title="Add Elements"> |
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1221 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"> |
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1222 <validator type="regex" message="This filename doesn't match the regex.">.+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz</validator> |
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|
1223 </param> |
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|
1224 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
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|
1225 </repeat> |
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|
1226 </when> |
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1227 </conditional> |
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1228 </section> |
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|
1229 <section name="import_manifest" expanded="true" title="Import manifest"> |
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|
1230 <param name="name" type="text" value="MANIFEST" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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|
1231 <param name="data" type="data" format="data" help="This data should be formatted as a FastqManifestFormat. See the documentation below for more information."/> |
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|
1232 </section> |
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|
1233 <section name="import_metadata" expanded="true" title="Import metadata"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1234 <param name="name" type="text" value="metadata.yml" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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|
1235 <param name="data" type="data" format="data" help="This data should be formatted as a YamlFormat. See the documentation below for more information."/> |
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|
1236 </section> |
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|
1237 </when> |
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|
1238 </conditional> |
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|
1239 </when> |
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|
1240 <when value="SampleData__ob__Probabilities__cb__"> |
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|
1241 <conditional name="__q2galaxy__GUI__cond__format__"> |
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|
1242 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1243 <option value="ProbabilitiesFormat" selected="true">Probabilities Format</option> |
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|
1244 </param> |
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|
1245 <when value="ProbabilitiesFormat"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1246 <section name="import" expanded="true" title="Import"> |
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|
1247 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1248 <param name="data" type="data" format="data" help="This data should be formatted as a ProbabilitiesFormat. See the documentation below for more information."/> |
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|
1249 </section> |
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|
1250 </when> |
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|
1251 </conditional> |
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|
1252 </when> |
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|
1253 <when value="SampleData__ob__RegressorPredictions__cb__"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1254 <conditional name="__q2galaxy__GUI__cond__format__"> |
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|
1255 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1256 <option value="PredictionsFormat" selected="true">Predictions Format</option> |
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|
1257 </param> |
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|
1258 <when value="PredictionsFormat"> |
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|
1259 <section name="import" expanded="true" title="Import"> |
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|
1260 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1261 <param name="data" type="data" format="data" help="This data should be formatted as a PredictionsFormat. See the documentation below for more information."/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1262 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1263 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1264 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1265 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1266 <when value="SampleData__ob__SequencesWithQuality__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1267 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1268 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1269 <option value="CasavaOneEightLanelessPerSampleDirFmt" selected="false">Casava One Eight Laneless Per Sample Directory Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1270 <option value="CasavaOneEightSingleLanePerSampleDirFmt" selected="false">Casava One Eight Single Lane Per Sample Directory Format</option> |
1
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
0
diff
changeset
|
1271 <option value="SampleIdIndexedSingleEndPerSampleDirFmt" selected="false">Sample Id Indexed Single End Per Sample Directory Format</option> |
0
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1272 <option value="SingleEndFastqManifestPhred33" selected="false">Single End Fastq Manifest Phred33</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1273 <option value="SingleEndFastqManifestPhred33V2" selected="false">Single End Fastq Manifest Phred33V2</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1274 <option value="SingleEndFastqManifestPhred64" selected="false">Single End Fastq Manifest Phred64</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1275 <option value="SingleEndFastqManifestPhred64V2" selected="false">Single End Fastq Manifest Phred64V2</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1276 <option value="SingleLanePerSamplePairedEndFastqDirFmt" selected="false">Single Lane Per Sample Paired End Fastq Directory Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1277 <option value="SingleLanePerSampleSingleEndFastqDirFmt" selected="true">Single Lane Per Sample Single End Fastq Directory Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1278 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1279 <when value="CasavaOneEightLanelessPerSampleDirFmt"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1280 <section name="import_sequences" expanded="true" title="Import sequences"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1281 <conditional name="__q2galaxy__GUI__cond__sequences__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1282 <param name="__q2galaxy__GUI__select__picker__" type="select" label="Select a mechanism"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1283 <option value="collection" selected="true">Use collection to import</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1284 <option value="individual">Associate individual files</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1285 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1286 <when value="collection"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
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|
1287 <param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_R[12]_001\.fastq\.gz"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1288 <conditional name="__q2galaxy__GUI__cond__add_ext__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
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|
1289 <param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one."> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1290 <option value="no">No, use element identifiers as is</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1291 <option value="yes">Yes, append an extension</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1292 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1293 <when value="yes"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1294 <param name="ext" type="text" label="Extension to append (e.g. '.fastq.gz')"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1295 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1296 <when value="no"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1297 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1298 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1299 <when value="individual"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1300 <repeat name="elements" min="1" title="Add Elements"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1301 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+_.+_R[12]_001\.fastq\.gz"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1302 <validator type="regex" message="This filename doesn't match the regex.">.+_.+_R[12]_001\.fastq\.gz</validator> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1303 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1304 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1305 </repeat> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1306 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1307 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
1308 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1309 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1310 <when value="CasavaOneEightSingleLanePerSampleDirFmt"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1311 <section name="import_sequences" expanded="true" title="Import sequences"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1312 <conditional name="__q2galaxy__GUI__cond__sequences__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1313 <param name="__q2galaxy__GUI__select__picker__" type="select" label="Select a mechanism"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1314 <option value="collection" selected="true">Use collection to import</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1315 <option value="individual">Associate individual files</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1316 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1317 <when value="collection"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1318 <param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1319 <conditional name="__q2galaxy__GUI__cond__add_ext__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1320 <param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one."> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1321 <option value="no">No, use element identifiers as is</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1322 <option value="yes">Yes, append an extension</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1323 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
1324 <when value="yes"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1325 <param name="ext" type="text" label="Extension to append (e.g. '.fastq.gz')"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1326 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
1327 <when value="no"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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|
1328 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
1329 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1330 <when value="individual"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1331 <repeat name="elements" min="1" title="Add Elements"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1332 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
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|
1333 <validator type="regex" message="This filename doesn't match the regex.">.+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz</validator> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1334 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1335 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1336 </repeat> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1337 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1338 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1339 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1340 </when> |
1
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
0
diff
changeset
|
1341 <when value="SampleIdIndexedSingleEndPerSampleDirFmt"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
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diff
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|
1342 <section name="import_sequences" expanded="true" title="Import sequences"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
0
diff
changeset
|
1343 <conditional name="__q2galaxy__GUI__cond__sequences__"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
0
diff
changeset
|
1344 <param name="__q2galaxy__GUI__select__picker__" type="select" label="Select a mechanism"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
0
diff
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|
1345 <option value="collection" selected="true">Use collection to import</option> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
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|
1346 <option value="individual">Associate individual files</option> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
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diff
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|
1347 </param> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
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diff
changeset
|
1348 <when value="collection"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1349 <param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+\.fastq\.gz"/> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
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diff
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|
1350 <conditional name="__q2galaxy__GUI__cond__add_ext__"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1351 <param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one."> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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diff
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|
1352 <option value="no">No, use element identifiers as is</option> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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0
diff
changeset
|
1353 <option value="yes">Yes, append an extension</option> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1354 </param> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1355 <when value="yes"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1356 <param name="ext" type="text" label="Extension to append (e.g. '.fastq.gz')"/> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1357 </when> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1358 <when value="no"/> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1359 </conditional> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1360 </when> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1361 <when value="individual"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
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|
1362 <repeat name="elements" min="1" title="Add Elements"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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diff
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|
1363 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+\.fastq\.gz"> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
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diff
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|
1364 <validator type="regex" message="This filename doesn't match the regex.">.+\.fastq\.gz</validator> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1365 </param> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1366 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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diff
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|
1367 </repeat> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1368 </when> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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changeset
|
1369 </conditional> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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diff
changeset
|
1370 </section> |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1371 </when> |
0
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1372 <when value="SingleEndFastqManifestPhred33"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1373 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
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|
1374 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1375 <param name="data" type="data" format="data" help="This data should be formatted as a SingleEndFastqManifestPhred33. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1376 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1377 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
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|
1378 <when value="SingleEndFastqManifestPhred33V2"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1379 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1380 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1381 <param name="data" type="data" format="data" help="This data should be formatted as a SingleEndFastqManifestPhred33V2. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1382 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1383 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1384 <when value="SingleEndFastqManifestPhred64"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1385 <section name="import" expanded="true" title="Import"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1386 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1387 <param name="data" type="data" format="data" help="This data should be formatted as a SingleEndFastqManifestPhred64. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1388 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1389 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1390 <when value="SingleEndFastqManifestPhred64V2"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1391 <section name="import" expanded="true" title="Import"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1392 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1393 <param name="data" type="data" format="data" help="This data should be formatted as a SingleEndFastqManifestPhred64V2. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1394 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1395 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1396 <when value="SingleLanePerSamplePairedEndFastqDirFmt"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1397 <section name="import_sequences" expanded="true" title="Import sequences"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1398 <conditional name="__q2galaxy__GUI__cond__sequences__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1399 <param name="__q2galaxy__GUI__select__picker__" type="select" label="Select a mechanism"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1400 <option value="collection" selected="true">Use collection to import</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1401 <option value="individual">Associate individual files</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1402 </param> |
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1403 <when value="collection"> |
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1404 <param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/> |
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|
1405 <conditional name="__q2galaxy__GUI__cond__add_ext__"> |
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|
1406 <param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one."> |
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1407 <option value="no">No, use element identifiers as is</option> |
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|
1408 <option value="yes">Yes, append an extension</option> |
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1409 </param> |
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1410 <when value="yes"> |
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1411 <param name="ext" type="text" label="Extension to append (e.g. '.fastq.gz')"/> |
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|
1412 </when> |
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|
1413 <when value="no"/> |
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1414 </conditional> |
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1415 </when> |
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1416 <when value="individual"> |
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1417 <repeat name="elements" min="1" title="Add Elements"> |
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1418 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"> |
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1419 <validator type="regex" message="This filename doesn't match the regex.">.+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz</validator> |
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1420 </param> |
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1421 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
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1422 </repeat> |
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1423 </when> |
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1424 </conditional> |
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1425 </section> |
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1426 <section name="import_manifest" expanded="true" title="Import manifest"> |
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1427 <param name="name" type="text" value="MANIFEST" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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1428 <param name="data" type="data" format="data" help="This data should be formatted as a FastqManifestFormat. See the documentation below for more information."/> |
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1429 </section> |
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|
1430 <section name="import_metadata" expanded="true" title="Import metadata"> |
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|
1431 <param name="name" type="text" value="metadata.yml" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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1432 <param name="data" type="data" format="data" help="This data should be formatted as a YamlFormat. See the documentation below for more information."/> |
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|
1433 </section> |
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|
1434 </when> |
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|
1435 <when value="SingleLanePerSampleSingleEndFastqDirFmt"> |
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1436 <section name="import_sequences" expanded="true" title="Import sequences"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1437 <conditional name="__q2galaxy__GUI__cond__sequences__"> |
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|
1438 <param name="__q2galaxy__GUI__select__picker__" type="select" label="Select a mechanism"> |
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1439 <option value="collection" selected="true">Use collection to import</option> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1440 <option value="individual">Associate individual files</option> |
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|
1441 </param> |
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|
1442 <when value="collection"> |
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|
1443 <param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/> |
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|
1444 <conditional name="__q2galaxy__GUI__cond__add_ext__"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1445 <param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one."> |
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|
1446 <option value="no">No, use element identifiers as is</option> |
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|
1447 <option value="yes">Yes, append an extension</option> |
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|
1448 </param> |
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|
1449 <when value="yes"> |
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|
1450 <param name="ext" type="text" label="Extension to append (e.g. '.fastq.gz')"/> |
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|
1451 </when> |
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|
1452 <when value="no"/> |
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1453 </conditional> |
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1454 </when> |
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|
1455 <when value="individual"> |
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|
1456 <repeat name="elements" min="1" title="Add Elements"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1457 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"> |
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|
1458 <validator type="regex" message="This filename doesn't match the regex.">.+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz</validator> |
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|
1459 </param> |
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|
1460 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
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|
1461 </repeat> |
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|
1462 </when> |
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|
1463 </conditional> |
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|
1464 </section> |
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|
1465 <section name="import_manifest" expanded="true" title="Import manifest"> |
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|
1466 <param name="name" type="text" value="MANIFEST" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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|
1467 <param name="data" type="data" format="data" help="This data should be formatted as a FastqManifestFormat. See the documentation below for more information."/> |
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|
1468 </section> |
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|
1469 <section name="import_metadata" expanded="true" title="Import metadata"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1470 <param name="name" type="text" value="metadata.yml" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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|
1471 <param name="data" type="data" format="data" help="This data should be formatted as a YamlFormat. See the documentation below for more information."/> |
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changeset
|
1472 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1473 </when> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1474 </conditional> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1475 </when> |
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|
1476 <when value="SampleData__ob__Sequences__cb__"> |
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|
1477 <conditional name="__q2galaxy__GUI__cond__format__"> |
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|
1478 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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|
1479 <option value="QIIME1DemuxFormat" selected="true">QIIME1 Demux Format</option> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1480 <option value="SingleLanePerSampleSingleEndFastqDirFmt" selected="false">Single Lane Per Sample Single End Fastq Directory Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1481 </param> |
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|
1482 <when value="QIIME1DemuxFormat"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1483 <section name="import" expanded="true" title="Import"> |
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|
1484 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1485 <param name="data" type="data" format="data" help="This data should be formatted as a QIIME1DemuxFormat. See the documentation below for more information."/> |
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|
1486 </section> |
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|
1487 </when> |
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|
1488 <when value="SingleLanePerSampleSingleEndFastqDirFmt"> |
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|
1489 <section name="import_sequences" expanded="true" title="Import sequences"> |
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|
1490 <conditional name="__q2galaxy__GUI__cond__sequences__"> |
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|
1491 <param name="__q2galaxy__GUI__select__picker__" type="select" label="Select a mechanism"> |
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1492 <option value="collection" selected="true">Use collection to import</option> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1493 <option value="individual">Associate individual files</option> |
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|
1494 </param> |
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|
1495 <when value="collection"> |
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1496 <param name="elements" type="data_collection" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information. Elements must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"/> |
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1497 <conditional name="__q2galaxy__GUI__cond__add_ext__"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1498 <param name="__q2galaxy__GUI__select__ext_pick__" type="select" label="Append an extension?" help="This is needed if your element identifiers lack one."> |
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|
1499 <option value="no">No, use element identifiers as is</option> |
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|
1500 <option value="yes">Yes, append an extension</option> |
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|
1501 </param> |
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|
1502 <when value="yes"> |
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|
1503 <param name="ext" type="text" label="Extension to append (e.g. '.fastq.gz')"/> |
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|
1504 </when> |
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|
1505 <when value="no"/> |
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1506 </conditional> |
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|
1507 </when> |
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|
1508 <when value="individual"> |
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|
1509 <repeat name="elements" min="1" title="Add Elements"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1510 <param name="name" type="text" help="Filename to import the data as. Must match regex: .+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz"> |
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|
1511 <validator type="regex" message="This filename doesn't match the regex.">.+_.+_L[0-9][0-9][0-9]_R[12]_001\.fastq\.gz</validator> |
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|
1512 </param> |
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|
1513 <param name="data" type="data" format="data" help="This data should be formatted as a FastqGzFormat. See the documentation below for more information."/> |
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|
1514 </repeat> |
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|
1515 </when> |
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1516 </conditional> |
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1517 </section> |
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|
1518 <section name="import_manifest" expanded="true" title="Import manifest"> |
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|
1519 <param name="name" type="text" value="MANIFEST" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1520 <param name="data" type="data" format="data" help="This data should be formatted as a FastqManifestFormat. See the documentation below for more information."/> |
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|
1521 </section> |
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|
1522 <section name="import_metadata" expanded="true" title="Import metadata"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1523 <param name="name" type="text" value="metadata.yml" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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|
1524 <param name="data" type="data" format="data" help="This data should be formatted as a YamlFormat. See the documentation below for more information."/> |
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|
1525 </section> |
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|
1526 </when> |
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1527 </conditional> |
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1528 </when> |
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|
1529 <when value="SampleData__ob__TrueTargets__cb__"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1530 <conditional name="__q2galaxy__GUI__cond__format__"> |
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|
1531 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1532 <option value="PredictionsFormat" selected="true">Predictions Format</option> |
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|
1533 </param> |
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|
1534 <when value="PredictionsFormat"> |
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|
1535 <section name="import" expanded="true" title="Import"> |
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|
1536 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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|
1537 <param name="data" type="data" format="data" help="This data should be formatted as a PredictionsFormat. See the documentation below for more information."/> |
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|
1538 </section> |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1539 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1540 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1541 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1542 <when value="SampleEstimator__ob__Classifier__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1543 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1544 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1545 <option value="SampleEstimatorDirFmt" selected="true">Sample Estimator Directory Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1546 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1547 <when value="SampleEstimatorDirFmt"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1548 <section name="import_version_info" expanded="true" title="Import version_info"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
1549 <param name="name" type="text" value="sklearn_version.json" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1550 <param name="data" type="data" format="data" help="This data should be formatted as a JSONFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1551 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1552 <section name="import_sklearn_pipeline" expanded="true" title="Import sklearn_pipeline"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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|
1553 <param name="name" type="text" value="sklearn_pipeline.tar" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1554 <param name="data" type="data" format="data" help="This data should be formatted as a PickleFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1555 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1556 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1557 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1558 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1559 <when value="SampleEstimator__ob__Regressor__cb__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1560 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1561 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1562 <option value="SampleEstimatorDirFmt" selected="true">Sample Estimator Directory Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1563 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1564 <when value="SampleEstimatorDirFmt"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1565 <section name="import_version_info" expanded="true" title="Import version_info"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1566 <param name="name" type="text" value="sklearn_version.json" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1567 <param name="data" type="data" format="data" help="This data should be formatted as a JSONFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1568 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1569 <section name="import_sklearn_pipeline" expanded="true" title="Import sklearn_pipeline"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1570 <param name="name" type="text" value="sklearn_pipeline.tar" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1571 <param name="data" type="data" format="data" help="This data should be formatted as a PickleFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1572 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1573 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1574 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1575 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1576 <when value="SeppReferenceDatabase"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1577 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1578 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1579 <option value="SeppReferenceDirFmt" selected="true">Sepp Reference Directory Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1580 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1581 <when value="SeppReferenceDirFmt"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1582 <section name="import_alignment" expanded="true" title="Import alignment"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1583 <param name="name" type="text" value="aligned-dna-sequences.fasta" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1584 <param name="data" type="data" format="data" help="This data should be formatted as a AlignedDNAFASTAFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1585 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1586 <section name="import_phylogeny" expanded="true" title="Import phylogeny"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1587 <param name="name" type="text" value="tree.nwk" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1588 <param name="data" type="data" format="data" help="This data should be formatted as a NewickFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1589 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1590 <section name="import_raxml_info" expanded="true" title="Import raxml_info"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1591 <param name="name" type="text" value="raxml-info.txt" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1592 <param name="data" type="data" format="data" help="This data should be formatted as a RAxMLinfoFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1593 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1594 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1595 </conditional> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1596 </when> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1597 <when value="TaxonomicClassifier"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1598 <conditional name="__q2galaxy__GUI__cond__format__"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1599 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1600 <option value="TaxonomicClassiferTemporaryPickleDirFmt" selected="true">Taxonomic Classifer Temporary Pickle Directory Format</option> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1601 </param> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1602 <when value="TaxonomicClassiferTemporaryPickleDirFmt"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1603 <section name="import_version_info" expanded="true" title="Import version_info"> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1604 <param name="name" type="text" value="sklearn_version.json" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1605 <param name="data" type="data" format="data" help="This data should be formatted as a JSONFormat. See the documentation below for more information."/> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1606 </section> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1607 <section name="import_sklearn_pipeline" expanded="true" title="Import sklearn_pipeline"> |
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1608 <param name="name" type="text" value="sklearn_pipeline.tar" help="Filename to import the data as. You shouldn't need to change this unless something is wrong."/> |
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1609 <param name="data" type="data" format="data" help="This data should be formatted as a PickleFormat. See the documentation below for more information."/> |
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1610 </section> |
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1611 </when> |
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1612 </conditional> |
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1613 </when> |
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1614 <when value="UchimeStats"> |
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1615 <conditional name="__q2galaxy__GUI__cond__format__"> |
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1616 <param name="format" type="select" label="QIIME 2 file format to import from:"> |
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1617 <option value="UchimeStatsFmt" selected="true">Uchime Stats Format</option> |
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1618 </param> |
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1619 <when value="UchimeStatsFmt"> |
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1620 <section name="import" expanded="true" title="Import"> |
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1621 <param name="name" type="hidden" value="__q2galaxy__::literal::None"/> |
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1622 <param name="data" type="data" format="data" help="This data should be formatted as a UchimeStatsFmt. See the documentation below for more information."/> |
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1623 </section> |
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1624 </when> |
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1625 </conditional> |
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1626 </when> |
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1627 </conditional> |
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1628 </inputs> |
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1629 <outputs> |
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1630 <data name="imported_data" format="qza" from_work_dir="imported_data.qza"/> |
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1631 </outputs> |
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1632 <help> |
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1633 QIIME 2: tools import |
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1634 ===================== |
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1635 Import data as a QIIME 2 artifact |
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1636 |
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1637 Instructions |
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1638 ------------ |
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1639 |
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1640 1. Select the type you wish to import. If you are uncertain, consider what |
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planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1641 your next action would be and identify what type it requires. |
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1642 |
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1643 2. Identify which format will best suite the data you have available. Many |
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1644 types will have only a single format available. There is some documentation |
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1645 available below on the different formats, however there may not be |
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1646 very much documentation available for your format. |
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|
1647 |
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1648 3. For each part of the format, you will need to associate some data. |
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1649 |
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|
1650 a. If it is a simple format, you may just select the history dataset. |
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1651 b. If it is a more complex format, you will need to provide either a |
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1652 filename and history dataset, or a collection. |
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1653 c. For collections, they can be constructed via matching a regex against |
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1654 the names of the items in that collection. (You may need to append an |
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1655 extension if your collection's element IDs lack one.) Or you can |
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1656 provide individual history datasets with a filename as in the simpler |
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|
1657 cases. |
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1658 |
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1659 Formats: |
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|
1660 -------- |
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1661 These formats have documentation available. |
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1662 |
1
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1663 SampleIdIndexedSingleEndPerSampleDirFmt |
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1664 *************************************** |
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1665 Single-end reads in fastq.gz files where base filename is the sample id |
0
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1666 |
1
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1667 The full file name, minus the extension (`.fastq.gz`) is the sample id. |
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1668 For example, the sample id for the file: |
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1669 * `sample-1.fastq.gz` is `sample-1` |
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1670 * `xyz.fastq.gz` is `xyz` |
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1671 * `sample-42_S1_L001_R1_001.fastq.gz` is `sample-42_S1_L001_R1_001` |
0
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1672 |
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1673 TSVTaxonomyFormat |
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1674 ***************** |
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1675 Format for a 2+ column TSV file with an expected minimal header. |
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1676 |
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1677 The only header recognized by this format is: |
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1678 |
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1679 Feature ID<tab>Taxon |
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1680 |
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|
1681 Optionally followed by other arbitrary columns. |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1682 |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1683 This format supports blank lines. The expected header must be the first |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1684 non-blank line. In addition to the header, there must be at least one line |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1685 of data. |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1686 |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1687 |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
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changeset
|
1688 QIIME1DemuxFormat |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1689 ***************** |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1690 QIIME 1 demultiplexed FASTA format. |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1691 |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1692 The QIIME 1 demultiplexed FASTA format is the default output format of |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1693 ``split_libraries.py`` and ``split_libraries_fastq.py``. The file output by |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1694 QIIME 1 is named ``seqs.fna``; this filename is sometimes associated with |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1695 the file format itself due to its widespread usage in QIIME 1. |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1696 |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
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changeset
|
1697 The format is documented here: |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1698 http://qiime.org/documentation/file_formats.html#demultiplexed-sequences |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1699 |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1700 Format details: |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1701 |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1702 - FASTA file with exactly two lines per record: header and sequence. Each |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1703 sequence must span exactly one line and cannot be split across multiple |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1704 lines. |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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diff
changeset
|
1705 |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1706 - The ID in each header must follow the format ``<sample-id>_<seq-id>``. |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1707 ``<sample-id>`` is the identifier of the sample the sequence belongs to, |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1708 and ``<seq-id>`` is an identifier for the sequence *within* its sample. |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1709 In QIIME 1, ``<seq-id>`` is typically an incrementing integer starting |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1710 from zero, but any non-empty value can be used here, as long as the |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1711 header IDs remain unique throughout the file. Note: ``<sample-id>`` may |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1712 contain sample IDs that contain underscores; the rightmost underscore |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1713 will used to delimit sample and sequence IDs. |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1714 |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1715 - Descriptions in headers are permitted and ignored. |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1716 |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1717 - Header IDs must be unique within the file. |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1718 |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1719 - Each sequence must be DNA and cannot be empty. |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
changeset
|
1720 |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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parents:
diff
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|
1721 |
1
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1722 HeaderlessTSVTaxonomyFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1723 *************************** |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1724 Format for a 2+ column TSV file without a header. |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1725 |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1726 This format supports comment lines starting with #, and blank lines. |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1727 |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1728 |
0
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1729 FastqGzFormat |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1730 ************* |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1731 |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1732 A gzipped fastq file. |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1733 |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1734 |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1735 Additional formats without documentation: |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1736 ***************************************** |
1
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1737 - MixedCaseAlignedDNAFASTAFormat |
0
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
q2d2
parents:
diff
changeset
|
1738 - DeblurStatsFmt |
1
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1739 - DADA2StatsFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1740 - PairedEndFastqManifestPhred64 |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1741 - BIOMV210Format |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1742 - AlignedDNAFASTAFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1743 - DataLoafPackageDirFmt |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1744 - SingleEndFastqManifestPhred64 |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1745 - PairedDNASequencesDirectoryFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1746 - BLAST6Format |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1747 - EMPPairedEndDirFmt |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1748 - PlacementsFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1749 - AlignedProteinFASTAFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1750 - MixedCaseRNAFASTAFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1751 - FirstDifferencesFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1752 - CasavaOneEightLanelessPerSampleDirFmt |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1753 - Bowtie2IndexDirFmt |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1754 - EMPSingleEndCasavaDirFmt |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1755 - ProcrustesStatisticsFmt |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1756 - ProteinFASTAFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
0
diff
changeset
|
1757 - RNAFASTAFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1758 - SingleLanePerSampleSingleEndFastqDirFmt |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
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diff
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|
1759 - PairedEndFastqManifestPhred33V2 |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
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|
1760 - OrdinationFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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parents:
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diff
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|
1761 - MixedCaseDNAFASTAFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
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|
1762 - TaxonomicClassiferTemporaryPickleDirFmt |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1763 - ArtificialGroupingFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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1764 - BIOMV100Format |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
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|
1765 - CasavaOneEightSingleLanePerSampleDirFmt |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1766 - ErrorCorrectionDetailsFmt |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1767 - ImportanceFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
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|
1768 - SingleEndFastqManifestPhred33V2 |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
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1769 - DNAFASTAFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
parents:
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|
1770 - MultiplexedFastaQualDirFmt |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1771 - PredictionsFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
q2d2
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|
1772 - MultiplexedPairedEndBarcodeInSequenceDirFmt |
0
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1773 - PairedEndFastqManifestPhred33 |
1
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1774 - AlphaDiversityFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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1775 - ProbabilitiesFormat |
0
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1776 - EMPSingleEndDirFmt |
1
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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1777 - PairedRNASequencesDirectoryFormat |
0
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1778 - SingleEndFastqManifestPhred33 |
1
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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1779 - UchimeStatsFmt |
0
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1780 - EMPPairedEndCasavaDirFmt |
1
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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1781 - NewickFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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1782 - SampleEstimatorDirFmt |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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1783 - DifferentialFormat |
0
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
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1784 - LSMatFormat |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1785 - SingleLanePerSamplePairedEndFastqDirFmt |
1
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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1786 - QualityFilterStatsFmt |
0
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1787 - PairedEndFastqManifestPhred64V2 |
1
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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1788 - MixedCaseAlignedRNAFASTAFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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1789 - SingleEndFastqManifestPhred64V2 |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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|
1790 - AlignedRNAFASTAFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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1791 - BooleanSeriesFormat |
5d9a36073ed6
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 69da7976573cc07a363ac66bdacc9269d7cd3732
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1792 - SeppReferenceDirFmt |
0
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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|
1793 </help> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1794 <citations> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1795 <citation type="doi">10.1038/s41587-019-0209-9</citation> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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changeset
|
1796 </citations> |
1370f8d6e95b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2_core__tools commit 9023cfd83495a517fbcbb6f91d5b01a6f1afcda1
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1797 </tool> |