Mercurial > repos > rakesh4osdd > clsi_profile
diff test-data/input.csv @ 3:683299422575 draft
"planemo upload for repository https://github.com/rakesh4osdd/asist/tree/master commit f085b88bf75f7b45ac3b0c4e1c39214c0ac0b67d"
| author | rakesh4osdd |
|---|---|
| date | Tue, 29 Jun 2021 05:20:41 +0000 |
| parents | 62226cd1acb5 |
| children |
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--- a/test-data/input.csv Fri Jun 11 13:20:08 2021 +0000 +++ b/test-data/input.csv Tue Jun 29 05:20:41 2021 +0000 @@ -1,31 +1,31 @@ -id,genome Ids,Strain name,Antibiotics,Resistance_profile,sign,MIC,unit -470,CP021782.1,Acinetobacter baumannii A85,Colistin,Susceptible ,NA,0.1,mg/L -470,CP021782.1,Acinetobacter baumannii A85,Colistin,Susceptible ,NA,1,mg/L -470,CP021782.1,Acinetobacter baumannii A85,Colistin,Susceptible ,NA,2,mg/L -470,CP001172.2,Acinetobacter baumannii AB307-0294,Ampicillin,resistant,>=,0,mg/L -470,CP001172.2,Acinetobacter baumannii AB307-0294,Ampicillin/sulbactam,susceptible,<=,mg/L,mg/L -470,CP001172.2,Acinetobacter baumannii AB307-0294,piperacillin/tazobactam,susceptible,<=,0,mg/L -470,CP001172.2,Acinetobacter baumannii AB307-0294,Cefazolin,resistant,>=,64,mg/L -470,CP001172.2,Acinetobacter baumannii AB307-0294,Ceftriaxone,susceptible,==,16,mg/L -470,CP001172.2,Acinetobacter baumannii AB307-0294,Cefepime,susceptible,==,8,mg/L -470,CP001172.2,Acinetobacter baumannii AB307-0294,Meropenem,susceptible,<=,0.25,mg/L -470,CP001172.2,Acinetobacter baumannii AB307-0294,Imipenem,susceptible,<=,1,mg/L -470,CP001172.2,Acinetobacter baumannii AB307-0294,Tigecycline,susceptible,<=,0.5,mg/L -470,CP008706.1,Acinetobacter baumannii AB5075-UW,Ceftazidime,Resistant,NA,>128,mg/L -470,CP008706.1,Acinetobacter baumannii AB5075-UW,Cefepime,Resistant,NA,>256,mg/L -470,CP008706.1,Acinetobacter baumannii AB5075-UW,Ciprofloxacin,Resistant,NA,>32,mg/L -470,CP017152.1,Acinetobacter baumannii DU202,colistin ,Susceptible,NA,,mg/L -470,CP017152.1,Acinetobacter baumannii DU202,trimethoprim/sulfamethoxazole,Resistant,NA,8/152,mg/L -470,CP017152.1,Acinetobacter baumannii DU202,Ampicillin/sulbactam,Resistant,NA,>=0.3 mg/L,mg/L -470,CP017152.1,Acinetobacter baumannii DU202,ticarcillin/clavulanic acid,Resistant,NA,>=128/2,mg/L -470,CP017152.1,Acinetobacter baumannii DU202,piperacillin/tazobactam ,Resistant,NA,NA,mg/L -470,CP017152.1,Acinetobacter baumannii DU202,trimethoprim/sulfamethoxazole,Resistant,NA,8/152,mg/L -470,CP015483.1,Acinetobacter baumannii ORAB01,piperacillin/tazobactam,Resistant,NA,>64/4,mg/L -470,470.7601,Acinetobacter baumannii strain MRSN7100,amoxicillin/clavulanic acid,Resistant,>, 16/8,mg/L -470,470.7651,Acinetobacter baumannii strain MRSN7168,amoxicillin/clavulanic acid,Resistant,>, 16/8,mg/L -470,470.7764,Acinetobacter baumannii strain MRSN7336,amoxicillin/clavulanic acid,Resistant,>, 16/8,mg/L -470,470.8071,Acinetobacter baumannii strain MRSN7834,amoxicillin/clavulanic acid,Resistant,>, 16/8,mg/L -470,470.7405,Acinetobacter baumannii strain FDA-CDC-AR_0305,polymyxin B,Susceptible,==,1,mg/L -470,470.7406,Acinetobacter baumannii strain FDA-CDC-AR_0306,polymyxin B,Susceptible,==,1,mg/L -470,470.7407,Acinetobacter baumannii strain FDA-CDC-AR_0307,polymyxin B,Resistant,==,8,mg/L -470,470.7408,Acinetobacter baumannii strain FDA-CDC-AR_0308,polymyxin B,Resistant,==,4,mg/L +id,Strain name,Antibiotics,Resistance_profile,sign,MIC,unit +470,Acinetobacter baumannii A85,Colistin,Susceptible ,NA,0.1,mg/L +470,Acinetobacter baumannii A85,Colistin,Susceptible ,NA,1,mg/L +470,Acinetobacter baumannii A85,Colistin,Susceptible ,NA,2,mg/L +470,Acinetobacter baumannii AB307-0294,Ampicillin,resistant,>=,0,mg/L +470,Acinetobacter baumannii AB307-0294,Ampicillin/sulbactam,susceptible,<=,mg/L,mg/L +470,Acinetobacter baumannii AB307-0294,piperacillin/tazobactam,susceptible,<=,0,mg/L +470,Acinetobacter baumannii AB307-0294,Cefazolin,resistant,>=,64,mg/L +470,Acinetobacter baumannii AB307-0294,Ceftriaxone,susceptible,==,16,mg/L +470,Acinetobacter baumannii AB307-0294,Cefepime,susceptible,==,8,mg/L +470,Acinetobacter baumannii AB307-0294,Meropenem,susceptible,<=,0.25,mg/L +470,Acinetobacter baumannii AB307-0294,Imipenem,susceptible,<=,1,mg/L +470,Acinetobacter baumannii AB307-0294,Tigecycline,susceptible,<=,0.5,mg/L +470,Acinetobacter baumannii AB5075-UW,Ceftazidime,Resistant,NA,>128,mg/L +470,Acinetobacter baumannii AB5075-UW,Cefepime,Resistant,NA,>256,mg/L +470,Acinetobacter baumannii AB5075-UW,Ciprofloxacin,Resistant,NA,>32,mg/L +470,Acinetobacter baumannii DU202,colistin ,Susceptible,NA,,mg/L +470,Acinetobacter baumannii DU202,trimethoprim/sulfamethoxazole,Resistant,NA,8/152,mg/L +470,Acinetobacter baumannii DU202,Ampicillin/sulbactam,Resistant,NA,>=0.3 mg/L,mg/L +470,Acinetobacter baumannii DU202,ticarcillin/clavulanic acid,Resistant,NA,>=128/2,mg/L +470,Acinetobacter baumannii DU202,piperacillin/tazobactam ,Resistant,NA,NA,mg/L +470,Acinetobacter baumannii DU202,trimethoprim/sulfamethoxazole,Resistant,NA,8/152,mg/L +470,Acinetobacter baumannii ORAB01,piperacillin/tazobactam,Resistant,NA,>64/4,mg/L +470,Acinetobacter baumannii strain MRSN7100,amoxicillin/clavulanic acid,Resistant,>, 16/8,mg/L +470,Acinetobacter baumannii strain MRSN7168,amoxicillin/clavulanic acid,Resistant,>, 16/8,mg/L +470,Acinetobacter baumannii strain MRSN7336,amoxicillin/clavulanic acid,Resistant,>, 16/8,mg/L +470,Acinetobacter baumannii strain MRSN7834,amoxicillin/clavulanic acid,Resistant,>, 16/8,mg/L +470,Acinetobacter baumannii strain FDA-CDC-AR_0305,polymyxin B,Susceptible,==,1,mg/L +470,Acinetobacter baumannii strain FDA-CDC-AR_0306,polymyxin B,Susceptible,==,1,mg/L +470,Acinetobacter baumannii strain FDA-CDC-AR_0307,polymyxin B,Resistant,==,8,mg/L +470,Acinetobacter baumannii strain FDA-CDC-AR_0308,polymyxin B,Resistant,==,4,mg/L