Mercurial > repos > recetox > recetox_aplcms_hybrid
comparison recetox_aplcms_hybrid.xml @ 1:867c737a7f10 draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit b3e0c34f12c9c38fb34bf48197974620d60b50c5
| author | recetox |
|---|---|
| date | Thu, 26 May 2022 16:46:40 +0000 |
| parents | 1633a2a34255 |
| children | acd25e4fda77 |
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| 0:1633a2a34255 | 1:867c737a7f10 |
|---|---|
| 57 ]]></configfile> | 57 ]]></configfile> |
| 58 </configfiles> | 58 </configfiles> |
| 59 | 59 |
| 60 <expand macro="inputs"> | 60 <expand macro="inputs"> |
| 61 <expand macro="history_db"/> | 61 <expand macro="history_db"/> |
| 62 <expand macro="noise_filtering"/> | 62 <expand macro="noise_filtering"> |
| 63 <param name="min_exp" type="integer" min="1" value="2" | |
| 64 label="min_exp" | |
| 65 help="If a feature is to be included in the final feature table, it must be present in at least this number of samples." /> | |
| 66 </expand> | |
| 63 <expand macro="feature_detection"/> | 67 <expand macro="feature_detection"/> |
| 64 <expand macro="peak_alignment"/> | 68 <expand macro="peak_alignment"/> |
| 65 <expand macro="weak_signal_recovery"/> | 69 <expand macro="weak_signal_recovery"/> |
| 66 <expand macro="output_format"/> | 70 <expand macro="output_format"/> |
| 67 </expand> | 71 </expand> |
| 68 | 72 |
| 69 <outputs> | 73 <outputs> |
| 70 <expand macro="unsupervised_outputs"/> | 74 <expand macro="unsupervised_outputs"> |
| 71 <data name="updated_known_table" format="parquet" label="${tool.name} updated_known_table on ${on_string}"/> | 75 <collection name="extracted_features" type="list" label="${tool.name} extracted_features on ${on_string}"> |
| 76 <discover_datasets pattern="__designation__" directory="extracted" format="parquet" /> | |
| 77 </collection > | |
| 78 <collection name="corrected_features" type="list" label="${tool.name} corrected_features on ${on_string}"> | |
| 79 <discover_datasets pattern="__designation__" directory="corrected" format="parquet" /> | |
| 80 </collection > | |
| 81 </expand> | |
| 72 <data name="feature_known_table_pairing" format="tabular" | 82 <data name="feature_known_table_pairing" format="tabular" |
| 73 label="${tool.name} feature_known_table_pairing on ${on_string}" hidden="true"/> | 83 label="${tool.name} feature_known_table_pairing on ${on_string}" hidden="true"/> |
| 74 </outputs> | 84 </outputs> |
| 75 | 85 |
| 76 <tests> | 86 <tests> |