annotate mzml_id_getter.py @ 0:7e1217022278 draft

planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 506df2aef355b3791567283e1a175914f06b405a

1 #!/usr/bin/env python
2 
3 import argparse
4 import sys
5 
6 from pymzml.run import Reader
7 
8 
9 def main(argv):
10     parser = argparse.ArgumentParser(description='Get run ID from an mzML file.')
11     parser.add_argument('mzml_file', help='Path to an mzML file to get run ID from.')
12     args = parser.parse_args()
13 
14     mzml = Reader(args.mzml_file)
15     id = mzml.info['run_id']
16 
17     if id is not None:
18         with open("sample_name.txt", mode='x') as f:
19             f.write(id)
20 
21 
22 if __name__ == '__main__':
23     main(sys.argv[1:])