Mercurial > repos > rhohensinner > galaxy_irods_interface

changeset 0:7d8912d20007 draft

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"planemo upload commit b2a00d9c24285fef0fb131d1832ecf4c337e5038-dirty"
author rhohensinner
date Fri, 21 May 2021 09:51:30 +0000
parents
children 19c1cecdfdfd
files irods_download.xml irods_galaxy_registry.xml irods_upload.xml login.png main.py registry.xml
diffstat 6 files changed, 737 insertions(+), 0 deletions(-) [+]
line wrap: on
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/irods_download.xml	Fri May 21 09:51:30 2021 +0000
@@ -0,0 +1,82 @@
+<tool id="irods_download" name="iRODS Download" version="0.1" workflow_compatible="false">
+	<description>Download your files from iRODS into Galaxy</description>
+	<requirements>
+		<requirement type="package" version="0.8.2">python-irodsclient</requirement>
+		<requirement type="package" version="0.1.0">tk</requirement>
+	</requirements>
+
+	<command interpreter="python">
+		### using CHEETAH ###
+		## Set up iRODS params
+		#import json
+		#set params = {}
+		#set params["irods_host"] = str($custom_host)
+		#set params["irods_port"] = str($custom_port)
+		#set params["irods_zone"] = str($custom_zone)
+		##set params["filepath"] = str($file_path)
+
+		#if $file_select_config.selection_type == "use_path"
+		#set params["selection_type"] = "path"
+		#set params["file_path"] = str($file_select_config.file_path)
+		#set params["expl_path"] = ""
+		#end if
+		#if $file_select_config.selection_type == "use_explorer"
+		#set params["selection_type"] = "explorer"
+		#set params["file_path"] = ""
+		#set params["expl_path"] = str($file_select_config.explorer_entrypoint)
+		#end if
+		## set up Galaxy params
+		#set params["galaxy_user"] = str($__user_name__)
+		#set params["job_id"] = str($output.creating_job.id)
+		#set params["out_dir"] = str($output.files_path)
+		#set params["out_file"] = str($output)
+		#set params["galaxy_root"] = str($GALAXY_ROOT_DIR)
+		#set params["galaxy_datatypes"] = str($GALAXY_DATATYPES_CONF_FILE)
+		##import os
+		##import glob
+		##set $test = glob.glob("os.getcwd()" + "/**/irods_galaxy_registry.xml", recursive=True)
+		##set params["reg_file"]
+		#set params["tool_type"] = "down"
+		#set $params=json.dumps($params)
+		main.py '$params'
+	</command>
+
+	<inputs>
+		<param name="custom_host" type="text" value="data.cyverse.tugraz.at" label="iRODS Host:" />
+		<param name="custom_port" type="text" value="1247" label="iRODS Port:" />
+		<param name="custom_zone" type="text" value="TUG" label="iRODS Zone:" />
+		<conditional name="file_select_config">
+			<param type="select" display="radio" name="selection_type" label="File Selection:">
+				<option value="use_path">Use path to iRODS File or Directory</option>
+				<option value="use_explorer">Use file explorer</option>
+			</param>
+			<when value="use_path">
+				<param name="file_path" type="text" value="E.g.: /ZONE/home/USER/my_data.txt" label="Path to iRODS File or Directory:" />
+			</when>
+			<when value="use_explorer">
+				<param name="explorer_entrypoint" type="text" value="" label="Entry directory for file explorer (optional):" />
+			</when>
+		</conditional>
+	</inputs>
+
+	<outputs>
+		<data name="output" label="${tool.name}: " auto_format="true" />
+	</outputs>
+
+	<help>
+Download iRODS
+
+	</help>
+	 <citations>
+        	<citation type="bibtex">
+@misc{Download-iRODS,
+  author = {Hohensinner, Richard},
+  year = {2021},
+  title = {iRODSTools},
+  publisher = {GitLab},
+  journal = {GitLab repository},
+  url = {https://gitlab.tugraz.at/D463A320ED7901AB/galaxy_irods_tools},
+}
+		</citation>
+    	</citations>
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/irods_galaxy_registry.xml	Fri May 21 09:51:30 2021 +0000
@@ -0,0 +1,10 @@
+<?xml version="1.0"?>
+            <datatypes>
+              <registration converters_path="lib/galaxy/datatypes/converters" display_path="display_applications">
+                <datatype extension="ab1" type="galaxy.datatypes.binary:Ab1" mimetype="application/octet-stream" display_in_upload="true" description="A binary sequence file in 'ab1' format with a '.ab1' file extension.  You must manually select this 'File Format' when uploading the file." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Ab1" sniff_compressed_types="True"/><datatype extension="afg" type="galaxy.datatypes.assembly:Amos" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_cog_profile" type="galaxy.datatypes.anvio:AnvioComposite" display_in_upload="false" subclass="true" sniff_compressed_types="True"/><datatype extension="anvio_composite" type="galaxy.datatypes.anvio:AnvioComposite" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_classifier" type="galaxy.datatypes.data:Data" display_in_upload="false" subclass="true" sniff_compressed_types="True"/><datatype extension="anvio_contigs_db" type="galaxy.datatypes.anvio:AnvioContigsDB" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_db" type="galaxy.datatypes.anvio:AnvioDB" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_genomes_db" type="galaxy.datatypes.anvio:AnvioGenomesDB" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_pan_db" type="galaxy.datatypes.anvio:AnvioPanDB" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_pfam_profile" type="galaxy.datatypes.anvio:AnvioComposite" display_in_upload="false" subclass="true" sniff_compressed_types="True"/><datatype extension="anvio_profile_db" type="galaxy.datatypes.anvio:AnvioProfileDB" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_samples_db" type="galaxy.datatypes.anvio:AnvioSamplesDB" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_state" type="galaxy.datatypes.text:Json" mimetype="application/json" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_structure_db" type="galaxy.datatypes.anvio:AnvioStructureDB" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_variability" type="galaxy.datatypes.tabular:TSV" display_in_upload="false" subclass="true" sniff_compressed_types="True"/><datatype extension="arff" type="galaxy.datatypes.text:Arff" mimetype="text/plain" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="paf" type="galaxy.datatypes.text:Paf" mimetype="text/plain" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gfa1" type="galaxy.datatypes.text:Gfa1" mimetype="text/plain" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="asn1" type="galaxy.datatypes.data:GenericAsn1" mimetype="text/plain" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="asn1-binary" type="galaxy.datatypes.binary:GenericAsn1Binary" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="axt" type="galaxy.datatypes.sequence:Axt" display_in_upload="true" description="blastz pairwise alignment format.  Each alignment block in an axt file contains three lines: a summary line and 2 sequence lines.  Blocks are separated from one another by blank lines.  The summary line contains chromosomal position and size information about the alignment. It consists of 9 required fields." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Axt" sniff_compressed_types="True"/><datatype extension="fli" type="galaxy.datatypes.tabular:FeatureLocationIndex" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="bam" type="galaxy.datatypes.binary:Bam" mimetype="application/octet-stream" display_in_upload="true" description="A binary file compressed in the BGZF format with a '.bam' file extension." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#BAM" sniff_compressed_types="True"><converter file="bam_to_bai.xml" target_datatype="bai"/><converter file="bam_to_bigwig_converter.xml" target_datatype="bigwig"/><converter file="to_qname_sorted_bam.xml" target_datatype="qname_sorted.bam"/><display file="ucsc/bam.xml"/><display file="ensembl/ensembl_bam.xml"/><display file="igv/bam.xml"/><display file="igb/bam.xml"/><display file="iobio/bam.xml"/></datatype><datatype extension="bai" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="qname_input_sorted.bam" type="galaxy.datatypes.binary:BamInputSorted" mimetype="application/octet-stream" display_in_upload="false" description="A binary file compressed in the BGZF format with a '.bam' file extension and sorted based on the aligner output." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#BAM" sniff_compressed_types="True"></datatype><datatype extension="qname_sorted.bam" type="galaxy.datatypes.binary:BamQuerynameSorted" mimetype="application/octet-stream" display_in_upload="true" description="A binary file compressed in the BGZF format with a '.bam' file extension and sorted by queryname." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#BAM" sniff_compressed_types="True"></datatype><datatype extension="unsorted.bam" type="galaxy.datatypes.binary:BamNative" mimetype="application/octet-stream" display_in_upload="true" description="A binary file compressed in the BGZF format with a '.bam' file extension." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#BAM" sniff_compressed_types="True"><converter file="bam_to_bigwig_converter.xml" target_datatype="bigwig"/><converter file="to_coordinate_sorted_bam.xml" target_datatype="bam"/><converter file="to_qname_sorted_bam.xml" target_datatype="qname_sorted.bam"/></datatype><datatype extension="probam" type="galaxy.datatypes.binary:ProBam" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="cram" type="galaxy.datatypes.binary:CRAM" mimetype="application/octet-stream" display_in_upload="true" description="CRAM is a file format for highly efficient and tunable reference-based compression of alignment data." description_url="http://www.ebi.ac.uk/ena/software/cram-usage" sniff_compressed_types="True"><converter file="cram_to_bam_converter.xml" target_datatype="bam"/></datatype><datatype extension="bed" type="galaxy.datatypes.interval:Bed" display_in_upload="true" description="BED format provides a flexible way to define the data lines that are displayed in an annotation track. BED lines have three required columns and nine additional optional columns. The three required columns are chrom, chromStart and chromEnd." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Bed" sniff_compressed_types="True"><converter file="bed_to_gff_converter.xml" target_datatype="gff"/><converter file="bed_to_bgzip_converter.xml" target_datatype="bgzip"/><converter file="bed_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/><converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/><converter file="bed_to_fli_converter.xml" target_datatype="fli"/><display file="igb/bed.xml"/></datatype><datatype extension="bedgraph" type="galaxy.datatypes.interval:BedGraph" display_in_upload="true" sniff_compressed_types="True"><converter file="bedgraph_to_bigwig_converter.xml" target_datatype="bigwig"/><display file="igb/bedgraph.xml"/></datatype><datatype extension="bedstrict" type="galaxy.datatypes.interval:BedStrict" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="bed6" type="galaxy.datatypes.interval:Bed6" display_in_upload="true" sniff_compressed_types="True"></datatype><datatype extension="bed12" type="galaxy.datatypes.interval:Bed12" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="probed" type="galaxy.datatypes.interval:ProBed" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="len" type="galaxy.datatypes.chrominfo:ChromInfo" display_in_upload="true" sniff_compressed_types="True"><converter file="len_to_linecount.xml" target_datatype="linecount"/></datatype><datatype extension="daa" type="galaxy.datatypes.binary:DAA" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rma6" type="galaxy.datatypes.binary:RMA6" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="dmnd" type="galaxy.datatypes.binary:DMND" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="idat" type="galaxy.datatypes.binary:Idat" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="bigbed" type="galaxy.datatypes.binary:BigBed" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"><display file="ucsc/bigbed.xml"/><display file="igb/bb.xml"/></datatype><datatype extension="bigwig" type="galaxy.datatypes.binary:BigWig" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"><display file="ucsc/bigwig.xml"/><display file="igb/bigwig.xml"/><display file="igv/bigwig.xml"/></datatype><datatype extension="cxb" type="galaxy.datatypes.binary:Binary" mimetype="application/octet-stream" subclass="true" display_in_upload="true" description="Cuffquant output format" sniff_compressed_types="True"/><datatype extension="chrint" type="galaxy.datatypes.interval:ChromatinInteractions" display_in_upload="true" sniff_compressed_types="True"><converter file="interval_to_bgzip_converter.xml" target_datatype="bgzip"/><converter file="interval_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/><converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/></datatype><datatype extension="csv" type="galaxy.datatypes.tabular:CSV" display_in_upload="true" sniff_compressed_types="True"><converter file="csv_to_tabular.xml" target_datatype="tabular"/></datatype><datatype extension="tsv" type="galaxy.datatypes.tabular:TSV" display_in_upload="true" sniff_compressed_types="True"><converter file="tabular_to_csv.xml" target_datatype="csv"/></datatype><datatype extension="intermine_tabular" type="galaxy.datatypes.tabular:TSV" subclass="true" display_in_upload="true" sniff_compressed_types="True"><display file="intermine/intermine_simple.xml"/></datatype><datatype extension="customtrack" type="galaxy.datatypes.interval:CustomTrack" sniff_compressed_types="True"/><datatype extension="bowtie_color_index" type="galaxy.datatypes.ngsindex:BowtieColorIndex" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="bowtie_base_index" type="galaxy.datatypes.ngsindex:BowtieBaseIndex" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="csfasta" type="galaxy.datatypes.sequence:csFasta" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="data" type="galaxy.datatypes.data:Data" mimetype="application/octet-stream" max_optional_metadata_filesize="1048576" sniff_compressed_types="True"/><datatype extension="binary" type="galaxy.datatypes.binary:Binary" mimetype="application/octet-stream" max_optional_metadata_filesize="1048576" sniff_compressed_types="True"/><datatype extension="d3_hierarchy" type="galaxy.datatypes.text:Json" mimetype="application/json" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="imgt.json" type="galaxy.datatypes.text:ImgtJson" mimetype="application/json" display_in_upload="True" sniff_compressed_types="True"/><datatype extension="geojson" type="galaxy.datatypes.text:GeoJson" mimetype="application/json" display_in_upload="True" sniff_compressed_types="True"/><datatype extension="data_manager_json" type="galaxy.datatypes.text:Json" mimetype="application/json" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="dbn" type="galaxy.datatypes.sequence:DotBracket" display_in_upload="true" description="Dot-Bracket format is a text-based format for storing both an RNA sequence and its corresponding 2D structure." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Dbn" sniff_compressed_types="True"/><datatype extension="fai" type="galaxy.datatypes.tabular:Tabular" display_in_upload="true" subclass="true" description="A Fasta Index File is a text file consisting of lines each with five TAB-delimited columns : Name, Length, offset, linebases, Linewidth" description_url="http://www.htslib.org/doc/faidx.html" sniff_compressed_types="True"/><datatype extension="fasta" auto_compressed_types="gz" type="galaxy.datatypes.sequence:Fasta" display_in_upload="true" description="A sequence in FASTA format consists of a single-line description, followed by lines of sequence data. The first character of the description line is a greater-than ('&gt;') symbol in the first column. All lines should be shorter than 80 characters." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Fasta" sniff_compressed_types="True"><converter file="fasta_to_tabular_converter.xml" target_datatype="tabular"/><converter file="fasta_to_bowtie_base_index_converter.xml" target_datatype="bowtie_base_index"/><converter file="fasta_to_bowtie_color_index_converter.xml" target_datatype="bowtie_color_index"/><converter file="fasta_to_2bit.xml" target_datatype="twobit"/><converter file="fasta_to_len.xml" target_datatype="len"/><converter file="fasta_to_fai.xml" target_datatype="fai"/><display file="igv/genome_fasta.xml" inherit="true"/></datatype><datatype extension="fastg" type="galaxy.datatypes.sequence:Fastg" display_in_upload="true" description="fastg format faithfully represents genome assemblies in the face of allelic polymorphism and assembly uncertainty" description_url="http://fastg.sourceforge.net/FASTG_Spec_v1.00.pdf" sniff_compressed_types="True"/><datatype extension="fastq" auto_compressed_types="gz,bz2" type="galaxy.datatypes.sequence:Fastq" display_in_upload="true" description="FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Fastq" sniff_compressed_types="True"><converter file="fastq_to_fqtoc.xml" target_datatype="fqtoc"/></datatype><datatype extension="fastqsanger" auto_compressed_types="gz,bz2" type="galaxy.datatypes.sequence:FastqSanger" display_in_upload="true" sniff_compressed_types="True"><converter file="fastq_to_fqtoc.xml" target_datatype="fqtoc"/></datatype><datatype extension="fastqsolexa" auto_compressed_types="gz,bz2" type="galaxy.datatypes.sequence:FastqSolexa" display_in_upload="true" description="FastqSolexa is the Illumina (Solexa) variant of the Fastq format, which stores sequences and quality scores in a single file." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#FastqSolexa" sniff_compressed_types="True"><converter file="fastq_to_fqtoc.xml" target_datatype="fqtoc"/></datatype><datatype extension="fastqcssanger" auto_compressed_types="gz,bz2" type="galaxy.datatypes.sequence:FastqCSSanger" display_in_upload="true" sniff_compressed_types="True"><converter file="fastq_to_fqtoc.xml" target_datatype="fqtoc"/></datatype><datatype extension="fastqillumina" auto_compressed_types="gz,bz2" type="galaxy.datatypes.sequence:FastqIllumina" display_in_upload="true" sniff_compressed_types="True"><converter file="fastq_to_fqtoc.xml" target_datatype="fqtoc"/></datatype><datatype extension="fqtoc" type="galaxy.datatypes.sequence:SequenceSplitLocations" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="eland" type="galaxy.datatypes.tabular:Eland" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="elandmulti" type="galaxy.datatypes.tabular:ElandMulti" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="genetrack" type="galaxy.datatypes.tracks:GeneTrack" sniff_compressed_types="True"></datatype><datatype extension="gff" type="galaxy.datatypes.interval:Gff" display_in_upload="true" description="GFF lines have nine required fields that must be tab-separated." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#GFF" sniff_compressed_types="True"><converter file="gff_to_bed_converter.xml" target_datatype="bed"/><converter file="gff_to_interval_index_converter.xml" target_datatype="interval_index"/><converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/><converter file="gff_to_fli_converter.xml" target_datatype="fli"/><converter file="gff_to_bgzip_converter.xml" target_datatype="bgzip"/><display file="ensembl/ensembl_gff.xml" inherit="true"/><display file="igv/gff.xml" inherit="true"/></datatype><datatype extension="gff3" auto_compressed_types="gz,bz2" type="galaxy.datatypes.interval:Gff3" display_in_upload="true" description="The GFF3 format addresses the most common extensions to GFF, while preserving backward compatibility with previous formats." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#GFF3" sniff_compressed_types="True"/><datatype extension="gif" type="galaxy.datatypes.images:Gif" mimetype="image/gif" sniff_compressed_types="True"/><datatype extension="gmaj.zip" type="galaxy.datatypes.images:Gmaj" mimetype="application/zip" sniff_compressed_types="True"/><datatype extension="graph_dot" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="gtf" type="galaxy.datatypes.interval:Gtf" display_in_upload="true" sniff_compressed_types="True"><converter file="gff_to_interval_index_converter.xml" target_datatype="interval_index"/><converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/><display file="igb/gtf.xml"/></datatype><datatype extension="toolshed.gz" type="galaxy.datatypes.binary:Binary" mimetype="multipart/x-gzip" subclass="true" sniff_compressed_types="True"/><datatype extension="h5" type="galaxy.datatypes.binary:H5" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="loom" type="galaxy.datatypes.binary:Loom" description="An HDF5-based Loom File" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="h5ad" type="galaxy.datatypes.binary:Anndata" description="An HDF5-based anndata File" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mz5" type="galaxy.datatypes.binary:H5" subclass="true" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="hyphy_results.json" type="galaxy.datatypes.text:Json" mimetype="application/json" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="hivtrace" type="galaxy.datatypes.text:Json" mimetype="application/json" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="cool" type="galaxy.datatypes.binary:Cool" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mcool" type="galaxy.datatypes.binary:MCool" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="html" type="galaxy.datatypes.text:Html" mimetype="text/html" sniff_compressed_types="True"/><datatype extension="interval" type="galaxy.datatypes.interval:Interval" display_in_upload="true" description="File must start with definition line in the following format (columns may be in any order)." sniff_compressed_types="True"><converter file="interval_to_bed_converter.xml" target_datatype="bed"/><converter file="interval_to_bedstrict_converter.xml" target_datatype="bedstrict"/><converter file="interval_to_bed6_converter.xml" target_datatype="bed6"/><converter file="interval_to_bed12_converter.xml" target_datatype="bed12"/><converter file="interval_to_bgzip_converter.xml" target_datatype="bgzip"/><converter file="interval_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/><converter file="interval_to_bigwig_converter.xml" target_datatype="bigwig"/><display file="ensembl/ensembl_interval_as_bed.xml" inherit="true"/><display file="gbrowse/gbrowse_interval_as_bed.xml" inherit="true"/><display file="rviewer/bed.xml" inherit="true"/><display file="igv/interval_as_bed.xml" inherit="true"/></datatype><datatype extension="isa-tab" type="galaxy.datatypes.isa:IsaTab" mimetype="application/isa-tools" display_in_upload="true" description="ISA-Tab data type." description_url="https://isa-tools.org" sniff_compressed_types="True"/><datatype extension="isa-json" type="galaxy.datatypes.isa:IsaJson" mimetype="application/isa-tools" display_in_upload="true" description="ISA-JSON data type." description_url="https://isa-tools.org" sniff_compressed_types="True"/><datatype extension="picard_interval_list" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true" sniff_compressed_types="True"><converter file="picard_interval_list_to_bed6_converter.xml" target_datatype="bed6"/></datatype><datatype extension="gatk_interval" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gatk_report" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gatk_dbsnp" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gatk_tranche" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gatk_recal" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="jpg" type="galaxy.datatypes.images:Jpg" mimetype="image/jpeg" sniff_compressed_types="True"/><datatype extension="tiff" type="galaxy.datatypes.images:Tiff" mimetype="image/tiff" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="tf2" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="tf8" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="btf" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="tif" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="svs" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="scn" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="bif" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="vms" type="galaxy.datatypes.images:Hamamatsu" mimetype="image/hamamatsu" sniff_compressed_types="True"/><datatype extension="vmu" type="galaxy.datatypes.images:Hamamatsu" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="ndpi" type="galaxy.datatypes.images:Hamamatsu" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="mrxs" type="galaxy.datatypes.images:Mirax" mimetype="image/mirax" sniff_compressed_types="True"/><datatype extension="svslide" type="galaxy.datatypes.images:Sakura" mimetype="image/sakura" sniff_compressed_types="True"/><datatype extension="bmp" type="galaxy.datatypes.images:Bmp" mimetype="image/bmp" sniff_compressed_types="True"/><datatype extension="im" type="galaxy.datatypes.images:Im" mimetype="image/im" sniff_compressed_types="True"/><datatype extension="pcd" type="galaxy.datatypes.images:Pcd" mimetype="image/pcd" sniff_compressed_types="True"/><datatype extension="pcx" type="galaxy.datatypes.images:Pcx" mimetype="image/pcx" sniff_compressed_types="True"/><datatype extension="ppm" type="galaxy.datatypes.images:Ppm" mimetype="image/ppm" sniff_compressed_types="True"/><datatype extension="psd" type="galaxy.datatypes.images:Psd" mimetype="image/psd" sniff_compressed_types="True"/><datatype extension="xbm" type="galaxy.datatypes.images:Xbm" mimetype="image/xbm" sniff_compressed_types="True"/><datatype extension="xpm" type="galaxy.datatypes.images:Xpm" mimetype="image/xpm" sniff_compressed_types="True"/><datatype extension="rgb" type="galaxy.datatypes.images:Rgb" mimetype="image/rgb" sniff_compressed_types="True"/><datatype extension="pbm" type="galaxy.datatypes.images:Pbm" mimetype="image/pbm" sniff_compressed_types="True"/><datatype extension="pgm" type="galaxy.datatypes.images:Pgm" mimetype="image/pgm" sniff_compressed_types="True"/><datatype extension="nrrd" type="galaxy.datatypes.images:Nrrd" mimetype="image/nrrd" sniff_compressed_types="True"/><datatype extension="nhdr" type="galaxy.datatypes.images:Nrrd" subclass="true" sniff_compressed_types="True"/><datatype extension="rna_eps" type="galaxy.datatypes.sequence:RNADotPlotMatrix" mimetype="image/eps" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="zip" type="galaxy.datatypes.binary:CompressedZipArchive" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="tar" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true" sniff_compressed_types="True"><converter file="tar_to_directory.xml" target_datatype="directory"/></datatype><datatype extension="directory" type="galaxy.datatypes.data:Directory" sniff_compressed_types="True"></datatype><datatype extension="mrm" type="galaxy.datatypes.tabular:Tabular" display_in_upload="true" subclass="true" sniff_compressed_types="True"/><datatype extension="dta" type="galaxy.datatypes.proteomics:Dta" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="dta2d" type="galaxy.datatypes.proteomics:Dta2d" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="edta" type="galaxy.datatypes.proteomics:Edta" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="raw_pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" subclass="true" sniff_compressed_types="True"/><datatype extension="peptideprophet_pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" subclass="true" sniff_compressed_types="True"/><datatype extension="interprophet_pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" subclass="true" sniff_compressed_types="True"/><datatype extension="protxml" type="galaxy.datatypes.proteomics:ProtXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="paramxml" type="galaxy.datatypes.proteomics:ParamXml" mimetype="application/xml" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="qcml" type="galaxy.datatypes.xml:GenericXml" mimetype="application/xml" subclass="true" display_in_upload="true" description="Quality control data in XML format (https://code.google.com/p/qcml/)." sniff_compressed_types="True"/><datatype extension="kroenik" type="galaxy.datatypes.proteomics:Kroenik" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="peplist" type="galaxy.datatypes.proteomics:PepList" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="psms" type="galaxy.datatypes.proteomics:PSMS" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="pepxml.tsv" type="galaxy.datatypes.proteomics:PepXmlReport" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="protxml.tsv" type="galaxy.datatypes.proteomics:ProtXmlReport" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mascotdat" type="galaxy.datatypes.proteomics:MascotDat" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="mzid" type="galaxy.datatypes.proteomics:MzIdentML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="idxml" type="galaxy.datatypes.proteomics:IdXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="tandem" type="galaxy.datatypes.proteomics:TandemXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="sirius.ms" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="thermo.raw" type="galaxy.datatypes.proteomics:ThermoRAW" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="brukerbaf.d.tar" type="galaxy.datatypes.binary:BafTar" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="agilentbrukeryep.d.tar" type="galaxy.datatypes.binary:YepTar" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="brukertdf.d.tar" type="galaxy.datatypes.binary:TdfTar" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="agilentmasshunter.d.tar" type="galaxy.datatypes.binary:MassHunterTar" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="watersmasslynx.raw.tar" type="galaxy.datatypes.binary:MassLynxTar" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="wiff.tar" type="galaxy.datatypes.binary:WiffTar" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mascotxml" type="galaxy.datatypes.proteomics:MascotXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mztab" type="galaxy.datatypes.proteomics:MzTab" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mztab2" type="galaxy.datatypes.proteomics:MzTab2" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mzml" type="galaxy.datatypes.proteomics:MzML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="nmrml" type="galaxy.datatypes.proteomics:NmrML" mimetype="application/xml" display_in_upload="true" description="nmrML is an open mark-up language for NMR data." description_url="http://nmrml.org/schema/" sniff_compressed_types="True"/><datatype extension="mgf" type="galaxy.datatypes.proteomics:Mgf" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="wiff" type="galaxy.datatypes.proteomics:Wiff" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mzxml" type="galaxy.datatypes.proteomics:MzXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mzdata" type="galaxy.datatypes.proteomics:MzData" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="ms2" type="galaxy.datatypes.proteomics:Ms2" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mzq" type="galaxy.datatypes.proteomics:MzQuantML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="sqlite" type="galaxy.datatypes.binary:SQlite" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mz.sqlite" type="galaxy.datatypes.binary:MzSQlite" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="osw" type="galaxy.datatypes.binary:OSW" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="pqp" type="galaxy.datatypes.binary:PQP" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="traml" type="galaxy.datatypes.proteomics:TraML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="trafoxml" type="galaxy.datatypes.proteomics:TrafoXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="featurexml" type="galaxy.datatypes.proteomics:FeatureXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="consensusxml" type="galaxy.datatypes.proteomics:ConsensusXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="uniprotxml" type="galaxy.datatypes.proteomics:UniProtXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="xquest.xml" type="galaxy.datatypes.proteomics:XquestXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="spec.xml" type="galaxy.datatypes.proteomics:XquestSpecXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="qcml" type="galaxy.datatypes.proteomics:QCML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="msp" type="galaxy.datatypes.proteomics:Msp" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="splib_noindex" type="galaxy.datatypes.proteomics:SPLibNoIndex" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="splib" type="galaxy.datatypes.proteomics:SPLib" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="blib" type="galaxy.datatypes.binary:BlibSQlite" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="dlib" type="galaxy.datatypes.binary:DlibSQlite" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="elib" type="galaxy.datatypes.binary:ElibSQlite" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="hlf" type="galaxy.datatypes.proteomics:XHunterAslFormat" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="idpdb" type="galaxy.datatypes.binary:IdpDB" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="sf3" type="galaxy.datatypes.proteomics:Sf3" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="cps" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="ct" type="galaxy.datatypes.tabular:ConnectivityTable" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="postgresql" type="galaxy.datatypes.binary:PostgresqlArchive" display_in_upload="True" sniff_compressed_types="True"/><datatype extension="searchgui_archive" type="galaxy.datatypes.binary:SearchGuiArchive" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="fast5.tar" type="galaxy.datatypes.binary:Fast5Archive" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="fast5.tar.gz" type="galaxy.datatypes.binary:Fast5ArchiveGz" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="fast5.tar.bz2" type="galaxy.datatypes.binary:Fast5ArchiveBz2" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="peptideshaker_archive" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="percin" type="galaxy.datatypes.tabular:Tabular" subclass="true" sniff_compressed_types="True"/><datatype extension="percout" type="galaxy.datatypes.xml:GenericXml" subclass="true" sniff_compressed_types="True"/><datatype extension="hardklor" type="galaxy.datatypes.tabular:Tabular" subclass="true" sniff_compressed_types="True"/><datatype extension="kronik" type="galaxy.datatypes.tabular:Tabular" subclass="true" sniff_compressed_types="True"/><datatype extension="imzml" type="galaxy.datatypes.proteomics:ImzML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="analyze75" type="galaxy.datatypes.proteomics:Analyze75" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="peff" type="galaxy.datatypes.proteomics:PEFF" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="deeptools_compute_matrix_archive" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="deeptools_coverage_matrix" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="netcdf" type="galaxy.datatypes.binary:NetCDF" mimetype="application/octet-stream" display_in_upload="true" description="Format used by netCDF software library for writing and reading chromatography-MS data files." sniff_compressed_types="True"/><datatype extension="eps" type="galaxy.datatypes.images:Eps" mimetype="image/eps" sniff_compressed_types="True"/><datatype extension="rast" type="galaxy.datatypes.images:Rast" mimetype="image/rast" sniff_compressed_types="True"/><datatype extension="laj" type="galaxy.datatypes.images:Laj" sniff_compressed_types="True"/><datatype extension="lav" type="galaxy.datatypes.sequence:Lav" display_in_upload="true" description="Lav is the primary output format for BLASTZ.  The first line of a .lav file begins with #:lav.." sniff_compressed_types="True"/><datatype extension="maf" type="galaxy.datatypes.sequence:Maf" display_in_upload="true" description="TBA and multiz multiple alignment format.  The first line of a .maf file begins with ##maf. This word is followed by white-space-separated 'variable=value' pairs. There should be no white space surrounding the '='." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#MAF" sniff_compressed_types="True"><converter file="maf_to_fasta_converter.xml" target_datatype="fasta"/><converter file="maf_to_interval_converter.xml" target_datatype="interval"/></datatype><datatype extension="mafcustomtrack" type="galaxy.datatypes.sequence:MafCustomTrack" sniff_compressed_types="True"><display file="ucsc/maf_customtrack.xml"/></datatype><datatype extension="mtx" type="galaxy.datatypes.tabular:MatrixMarket" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="encodepeak" type="galaxy.datatypes.interval:ENCODEPeak" display_in_upload="true" sniff_compressed_types="True"><converter file="encodepeak_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/><converter file="encodepeak_to_bgzip_converter.xml" target_datatype="bgzip"/><converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/></datatype><datatype extension="pdf" type="galaxy.datatypes.images:Pdf" mimetype="application/pdf" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="pileup" type="galaxy.datatypes.tabular:Pileup" display_in_upload="true" sniff_compressed_types="True"><converter file="interval_to_bgzip_converter.xml" target_datatype="bgzip"/><converter file="interval_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/></datatype><datatype extension="obo" type="galaxy.datatypes.text:Obo" mimetype="text/html" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="owl" type="galaxy.datatypes.xml:Owl" mimetype="text/html" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="png" type="galaxy.datatypes.images:Png" mimetype="image/png" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="qual" type="galaxy.datatypes.qualityscore:QualityScore" sniff_compressed_types="True"/><datatype extension="qualsolexa" type="galaxy.datatypes.qualityscore:QualityScoreSolexa" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="qualillumina" type="galaxy.datatypes.qualityscore:QualityScoreIllumina" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="qualsolid" type="galaxy.datatypes.qualityscore:QualityScoreSOLiD" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="qual454" type="galaxy.datatypes.qualityscore:QualityScore454" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="roadmaps" type="galaxy.datatypes.assembly:Roadmaps" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="sam" type="galaxy.datatypes.tabular:Sam" display_in_upload="true" sniff_compressed_types="True"><converter file="sam_to_unsorted_bam.xml" target_datatype="unsorted.bam"/><converter file="to_coordinate_sorted_bam.xml" target_datatype="bam"/><converter file="to_qname_sorted_bam.xml" target_datatype="qname_sorted.bam"/><converter file="sam_to_bigwig_converter.xml" target_datatype="bigwig"/></datatype><datatype extension="scf" type="galaxy.datatypes.binary:Scf" mimetype="application/octet-stream" display_in_upload="true" description="A binary sequence file in 'scf' format with a '.scf' file extension.  You must manually select this 'File Format' when uploading the file." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Scf" sniff_compressed_types="True"/><datatype extension="sequences" type="galaxy.datatypes.assembly:Sequences" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="shp" type="galaxy.datatypes.gis:Shapefile" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="snpeffdb" type="galaxy.datatypes.text:SnpEffDb" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="snpsiftdbnsfp" type="galaxy.datatypes.text:SnpSiftDbNSFP" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="dbnsfp.tabular" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true" sniff_compressed_types="True"><converter file="tabular_to_dbnsfp.xml" target_datatype="snpsiftdbnsfp"/></datatype><datatype extension="sff" type="galaxy.datatypes.binary:Sff" mimetype="application/octet-stream" display_in_upload="true" description="A binary file in 'Standard Flowgram Format' with a '.sff' file extension." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Sff" sniff_compressed_types="True"/><datatype extension="sra" type="galaxy.datatypes.binary:Sra" mimetype="application/octet-stream" display_in_upload="true" description="A binary file archive format from the NCBI Sequence Read Archive with a '.sra' file extension." description_url="http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Overview_BK/#SRA_Overview_BK.4_SRA_Data_Structure" sniff_compressed_types="True"/><datatype extension="sra_manifest.tabular" type="galaxy.datatypes.tabular:SraManifest" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="svg" type="galaxy.datatypes.xml:GenericXml" mimetype="image/svg+xml" subclass="true" sniff_compressed_types="True"/><datatype extension="taxonomy" type="galaxy.datatypes.tabular:Taxonomy" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="tabular" type="galaxy.datatypes.tabular:Tabular" auto_compressed_types="gz" display_in_upload="true" description="Any data in tab delimited format (tabular)." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Tabular_.28tab_delimited.29" sniff_compressed_types="True"><converter file="tabular_to_csv.xml" target_datatype="csv"/></datatype><datatype extension="twobit" type="galaxy.datatypes.binary:TwoBit" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="sqmass" type="galaxy.datatypes.binary:SQmass" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gemini.sqlite" type="galaxy.datatypes.binary:GeminiSQLite" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="chira.sqlite" type="galaxy.datatypes.binary:ChiraSQLite" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="cuffdiff.sqlite" type="galaxy.datatypes.binary:CuffDiffSQlite" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gafa.sqlite" type="galaxy.datatypes.binary:GAFASQLite" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="ncbitaxonomy.sqlite" type="galaxy.datatypes.binary:NcbiTaxonomySQlite" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="txt" type="galaxy.datatypes.data:Text" display_in_upload="true" description="Any text file." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Plain_text" sniff_compressed_types="True"/><datatype extension="linecount" type="galaxy.datatypes.data:LineCount" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="memepsp" type="galaxy.datatypes.sequence:MemePsp" display_in_upload="true" description="The MEME Position Specific Priors (PSP) format includes the name of the sequence for which a prior distribution corresponds." description_url="http://meme-suite.org/doc/psp-format.html" sniff_compressed_types="True"/><datatype extension="memexml" type="galaxy.datatypes.xml:MEMEXml" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="cisml" type="galaxy.datatypes.xml:CisML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="xml" type="galaxy.datatypes.xml:GenericXml" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="vcf" type="galaxy.datatypes.tabular:Vcf" display_in_upload="true" sniff_compressed_types="True"><converter file="vcf_to_bgzip_converter.xml" target_datatype="bgzip"/><converter file="vcf_to_vcf_bgzip_converter.xml" target_datatype="vcf_bgzip"/><converter file="vcf_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/><converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/><display file="ucsc/vcf.xml"/><display file="igv/vcf.xml"/><display file="rviewer/vcf.xml" inherit="true"/><display file="iobio/vcf.xml"/></datatype><datatype extension="bcf" type="galaxy.datatypes.binary:Bcf" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"><converter file="bcf_to_bcf_uncompressed_converter.xml" target_datatype="bcf_uncompressed"/></datatype><datatype extension="bcf_bgzip" type="galaxy.datatypes.binary:Bcf" subclass="true" sniff_compressed_types="True"/><datatype extension="bcf_uncompressed" type="galaxy.datatypes.binary:BcfUncompressed" mimetype="application/octet-stream" sniff_compressed_types="True"><converter file="bcf_uncompressed_to_bcf_converter.xml" target_datatype="bcf"/></datatype><datatype extension="velvet" type="galaxy.datatypes.assembly:Velvet" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="wig" type="galaxy.datatypes.interval:Wiggle" display_in_upload="true" description="The wiggle format is line-oriented.  Wiggle data is preceded by a track definition line, which adds a number of options for controlling the default display of this track." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Wig" sniff_compressed_types="True"><converter file="wig_to_bigwig_converter.xml" target_datatype="bigwig"/><converter file="wiggle_to_simple_converter.xml" target_datatype="interval"/><display file="igb/wig.xml"/></datatype><datatype extension="interval_index" type="galaxy.datatypes.binary:Binary" subclass="true" sniff_compressed_types="True"/><datatype extension="odgi" type="galaxy.datatypes.binary:Binary" subclass="true" description="Genomic variation graphs self index used by odgi." display_in_upload="true" sniff_compressed_types="True"/><datatype extension="vg" type="galaxy.datatypes.binary:Binary" subclass="true" description="Genomic variation graphs." display_in_upload="true" sniff_compressed_types="True"/><datatype extension="xg" type="galaxy.datatypes.binary:Binary" subclass="true" description="Genomic variation graphs with vg index." display_in_upload="true" sniff_compressed_types="True"/><datatype extension="protobuf2" type="galaxy.datatypes.binary:Binary" subclass="true" description="Protocol Buffers (Protobuf) is data format for serializing structured data." sniff_compressed_types="True"/><datatype extension="protobuf3" type="galaxy.datatypes.binary:Binary" subclass="true" description="Protocol Buffers (Protobuf) is data format for serializing structured data." sniff_compressed_types="True"/><datatype extension="tabix" type="galaxy.datatypes.binary:Binary" subclass="true" sniff_compressed_types="True"/><datatype extension="bgzip" type="galaxy.datatypes.binary:Binary" subclass="true" sniff_compressed_types="True"/><datatype extension="vcf_bgzip" type="galaxy.datatypes.tabular:VcfGz" display_in_upload="true" sniff_compressed_types="True"><display file="igv/vcf.xml"/><converter file="vcf_bgzip_to_tabix_converter.xml" target_datatype="tabix"/><converter file="gz_to_uncompressed.xml" target_datatype="vcf"/></datatype><datatype extension="bus" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="kallisto.idx" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="phyloxml" type="galaxy.datatypes.xml:Phyloxml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="newick" type="galaxy.datatypes.data:Newick" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="nhx" type="galaxy.datatypes.data:Newick" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="nex" type="galaxy.datatypes.data:Nexus" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="iqtree" type="galaxy.datatypes.text:IQTree" sniff_compressed_types="True"/><datatype extension="mldist" type="galaxy.datatypes.mothur:SquareDistanceMatrix" sniff_compressed_types="True"/><datatype extension="affybatch" type="galaxy.datatypes.genetics:Affybatch" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="eigenstratgeno" type="galaxy.datatypes.genetics:Eigenstratgeno" sniff_compressed_types="True"/><datatype extension="eigenstratpca" type="galaxy.datatypes.genetics:Eigenstratpca" sniff_compressed_types="True"/><datatype extension="eset" type="galaxy.datatypes.genetics:Eset" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="fped" type="galaxy.datatypes.genetics:Fped" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="fphe" type="galaxy.datatypes.genetics:Fphe" display_in_upload="true" mimetype="text/html" sniff_compressed_types="True"/><datatype extension="gg" type="galaxy.datatypes.genetics:GenomeGraphs" sniff_compressed_types="True"/><datatype extension="ldindep" type="galaxy.datatypes.genetics:ldIndep" display_in_upload="true" sniff_compressed_types="True"></datatype><datatype extension="malist" type="galaxy.datatypes.genetics:MAlist" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="lped" type="galaxy.datatypes.genetics:Lped" display_in_upload="true" sniff_compressed_types="True"><converter file="lped_to_fped_converter.xml" target_datatype="fped"/><converter file="lped_to_pbed_converter.xml" target_datatype="pbed"/></datatype><datatype extension="pbed" type="galaxy.datatypes.genetics:Pbed" display_in_upload="true" sniff_compressed_types="True"><converter file="pbed_to_lped_converter.xml" target_datatype="lped"/><converter file="pbed_ldreduced_converter.xml" target_datatype="ldindep"/></datatype><datatype extension="pheno" type="galaxy.datatypes.genetics:Pheno" sniff_compressed_types="True"/><datatype extension="pphe" type="galaxy.datatypes.genetics:Pphe" display_in_upload="true" mimetype="text/html" sniff_compressed_types="True"/><datatype extension="rexpbase" type="galaxy.datatypes.genetics:RexpBase" sniff_compressed_types="True"/><datatype extension="rgenetics" type="galaxy.datatypes.genetics:Rgenetics" sniff_compressed_types="True"/><datatype extension="snptest" type="galaxy.datatypes.genetics:Snptest" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="snpmatrix" type="galaxy.datatypes.genetics:SNPMatrix" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="xls" type="galaxy.datatypes.binary:ExcelXls" sniff_compressed_types="True"/><datatype extension="ipynb" type="galaxy.datatypes.text:Ipynb" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="json" type="galaxy.datatypes.text:Json" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="expression.json" type="galaxy.datatypes.text:ExpressionJson" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="xgmml" type="galaxy.datatypes.graph:Xgmml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="sif" type="galaxy.datatypes.graph:Sif" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="triples" type="galaxy.datatypes.triples:Triples" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="hdt" type="galaxy.datatypes.triples:HDT" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="nt" type="galaxy.datatypes.triples:NTriples" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="n3" type="galaxy.datatypes.triples:N3" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="ttl" type="galaxy.datatypes.triples:Turtle" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdf" type="galaxy.datatypes.triples:Rdf" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="jsonld" type="galaxy.datatypes.triples:Jsonld" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="excel.xls" type="galaxy.datatypes.binary:ExcelXls" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="xlsx" type="galaxy.datatypes.binary:Xlsx" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="btwisted" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="cai" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="cat_db" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="charge" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="checktrans" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="chips" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="codcmp" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="coderet" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="compseq" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="cpgplot" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="cpgreport" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="cusp" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="cut" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="dan" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="digest" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="dreg" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="einverted" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="epestfind" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="equicktandem" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="est2genome" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="etandem" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="freak" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="fuzznuc" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="fuzzpro" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="fuzztran" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="garnier" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="geecee" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="helixturnhelix" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="hmoment" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="isochore" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="match" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="nametable" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="needle" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="newcpgreport" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="newcpgseek" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="noreturn" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="palindrome" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="pepcoil" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="pepinfo" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="pepstats" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="polydot" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="preg" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="prettyseq" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="primersearch" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="showfeat" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="showorf" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="sixpack" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="strider" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="supermatcher" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="syco" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="textsearch" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="vectorstrip" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="wobble" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="wordcount" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="dbmotif" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="diffseq" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="excel" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="feattable" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="motif" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="regions" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="seqtable" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="simple" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="table" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="tagseq" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="acedb" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="clustal" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="codata" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="embl" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="fitch" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="gcg" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="genbank" auto_compressed_types="gz" sniff_compressed_types="true" type="galaxy.datatypes.sequence:Genbank" display_in_upload="True"><display file="igv/genbank.xml"/></datatype><datatype extension="hennig86" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="ig" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="jackknifer" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="jackknifernon" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="mega" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="meganon" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="ncbi" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="nexus" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="nexusnon" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="phylip" type="galaxy.datatypes.phylip:Phylip" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="phylipnon" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="pir" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="staden" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="swiss" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="markx0" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="markx1" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="markx10" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="markx2" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="markx3" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="pair" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="score" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="srs" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="srspair" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="snaphmm" type="galaxy.datatypes.annotation:SnapHmm" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="augustus" type="galaxy.datatypes.annotation:Augustus" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="icm" type="galaxy.datatypes.binary:ICM" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="cm" type="galaxy.datatypes.msa:InfernalCM" display_in_upload="False" sniff_compressed_types="True"/><datatype extension="hmm2" type="galaxy.datatypes.msa:Hmmer2" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="hmm3" type="galaxy.datatypes.msa:Hmmer3" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="stockholm" type="galaxy.datatypes.msa:Stockholm_1_0" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="xmfa" type="galaxy.datatypes.msa:MauveXmfa" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="cel" type="galaxy.datatypes.microarrays:Cel" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gpr" type="galaxy.datatypes.microarrays:Gpr" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gal" type="galaxy.datatypes.microarrays:Gal" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdata" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" display_in_upload="true" description="Stored data from an R session" sniff_compressed_types="True"/><datatype extension="rdata.sce" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" description="Stored RDS from a SingleCellObject" sniff_compressed_types="True"/><datatype extension="rdata.xcms.raw" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdata.msnbase.raw" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdata.xcms.findchrompeaks" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdata.xcms.group" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdata.xcms.retcor" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdata.xcms.fillpeaks" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdata.camera.positive" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdata.camera.negative" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdata.camera.quick" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdock_as" type="galaxy.datatypes.binary:Binary" description="rDock active site format" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="oxlicg" type="galaxy.datatypes.binary:OxliCountGraph" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="oxling" type="galaxy.datatypes.binary:OxliNodeGraph" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="oxlits" type="galaxy.datatypes.binary:OxliTagSet" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="oxlist" type="galaxy.datatypes.binary:OxliStopTags" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="oxliss" type="galaxy.datatypes.binary:OxliSubset" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="oxligl" type="galaxy.datatypes.binary:OxliGraphLabels" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="stl" type="galaxy.datatypes.constructive_solid_geometry:STL" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="plyascii" type="galaxy.datatypes.constructive_solid_geometry:PlyAscii" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="plybinary" type="galaxy.datatypes.constructive_solid_geometry:PlyBinary" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="vtkascii" type="galaxy.datatypes.constructive_solid_geometry:VtkAscii" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="vtkbinary" type="galaxy.datatypes.constructive_solid_geometry:VtkBinary" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="biom1" type="galaxy.datatypes.text:Biom1" display_in_upload="true" mimetype="application/json" sniff_compressed_types="True"><display file="biom/biom_simple.xml"/><converter file="biom1_to_biom2.xml" target_datatype="biom2"/></datatype><datatype extension="biom2" type="galaxy.datatypes.binary:Biom2" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"><converter file="biom2_to_biom1.xml" target_datatype="biom1"/></datatype><datatype extension="msh" type="galaxy.datatypes.binary:MashSketch" display_in_upload="True" sniff_compressed_types="True"/><datatype extension="scidx" type="galaxy.datatypes.interval:ScIdx" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="smi" type="galaxy.datatypes.molecules:SMILES" display_in_upload="true" sniff_compressed_types="True"><converter file="smi_to_sdf_converter.xml" target_datatype="sdf"/><converter file="smi_to_inchi_converter.xml" target_datatype="inchi"/><converter file="smi_to_cml_converter.xml" target_datatype="cml"/><converter file="smi_to_mol_converter.xml" target_datatype="mol"/><converter file="smi_to_mol2_converter.xml" target_datatype="mol2"/><converter file="smi_to_smi_converter.xml" target_datatype="smi"/></datatype><datatype extension="sdf" type="galaxy.datatypes.molecules:SDF" display_in_upload="true" sniff_compressed_types="True"><converter file="sdf_to_smi_converter.xml" target_datatype="smi"/><converter file="sdf_to_inchi_converter.xml" target_datatype="inchi"/><converter file="sdf_to_mol2_converter.xml" target_datatype="mol2"/><converter file="sdf_to_cml_converter.xml" target_datatype="cml"/><display file="icn3d/icn3d_simple.xml"/></datatype><datatype extension="inchi" type="galaxy.datatypes.molecules:InChI" display_in_upload="true" sniff_compressed_types="True"><converter file="inchi_to_smi_converter.xml" target_datatype="smi"/><converter file="inchi_to_sdf_converter.xml" target_datatype="sdf"/><converter file="inchi_to_mol_converter.xml" target_datatype="mol"/><converter file="inchi_to_mol2_converter.xml" target_datatype="mol2"/><converter file="inchi_to_cml_converter.xml" target_datatype="cml"/></datatype><datatype extension="mol" type="galaxy.datatypes.molecules:MOL" display_in_upload="true" sniff_compressed_types="True"><converter file="mol_to_smi_converter.xml" target_datatype="smi"/><converter file="mol_to_inchi_converter.xml" target_datatype="inchi"/><converter file="mol_to_mol2_converter.xml" target_datatype="mol2"/><converter file="mol_to_cml_converter.xml" target_datatype="cml"/></datatype><datatype extension="mol2" type="galaxy.datatypes.molecules:MOL2" display_in_upload="true" sniff_compressed_types="True"><converter file="mol2_to_smi_converter.xml" target_datatype="smi"/><converter file="mol2_to_sdf_converter.xml" target_datatype="sdf"/><converter file="mol2_to_inchi_converter.xml" target_datatype="inchi"/><converter file="mol2_to_mol_converter.xml" target_datatype="mol"/><converter file="mol2_to_cml_converter.xml" target_datatype="cml"/><display file="icn3d/icn3d_simple.xml"/></datatype><datatype extension="cml" type="galaxy.datatypes.molecules:CML" display_in_upload="true" sniff_compressed_types="True"><converter file="cml_to_smi_converter.xml" target_datatype="smi"/><converter file="cml_to_inchi_converter.xml" target_datatype="inchi"/><converter file="cml_to_sdf_converter.xml" target_datatype="sdf"/><converter file="cml_to_mol2_converter.xml" target_datatype="mol2"/></datatype><datatype extension="fps" type="galaxy.datatypes.molecules:FPS" mimetype="text/html" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="obfs" type="galaxy.datatypes.molecules:OBFS" mimetype="text/html" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="drf" type="galaxy.datatypes.molecules:DRF" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="phar" type="galaxy.datatypes.molecules:PHAR" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="pdb" type="galaxy.datatypes.molecules:PDB" display_in_upload="true" sniff_compressed_types="True"><display file="icn3d/icn3d_simple.xml"/></datatype><datatype extension="pdbqt" type="galaxy.datatypes.molecules:PDBQT" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="pqr" type="galaxy.datatypes.molecules:PQR" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="trr" type="galaxy.datatypes.binary:Trr" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="dcd" type="galaxy.datatypes.binary:Dcd" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="top" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="itp" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mdp" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="ndx" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="xvg" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="xtc" type="galaxy.datatypes.binary:Xtc" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="cpt" type="galaxy.datatypes.binary:Cpt" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="edr" type="galaxy.datatypes.binary:Edr" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="tpr" type="galaxy.datatypes.binary:Binary" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gro" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="vel" type="galaxy.datatypes.binary:Vel" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="grd" type="galaxy.datatypes.molecules:grd" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="grd.tgz" type="galaxy.datatypes.molecules:grdtgz" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.otu" type="galaxy.datatypes.mothur:Otu" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.list" type="galaxy.datatypes.mothur:Otu" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.sabund" type="galaxy.datatypes.mothur:Sabund" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.rabund" type="galaxy.datatypes.mothur:Sabund" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.shared" type="galaxy.datatypes.mothur:GroupAbund" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.relabund" type="galaxy.datatypes.mothur:GroupAbund" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.names" type="galaxy.datatypes.mothur:Names" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.design" type="galaxy.datatypes.mothur:Group" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.summary" type="galaxy.datatypes.mothur:Summary" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.groups" type="galaxy.datatypes.mothur:Group" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.oligos" type="galaxy.datatypes.mothur:Oligos" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.align" type="galaxy.datatypes.sequence:Fasta" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.accnos" type="galaxy.datatypes.mothur:AccNos" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.otulabels" type="galaxy.datatypes.mothur:AccNos" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.otu.corr" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.map" type="galaxy.datatypes.mothur:SecondaryStructureMap" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.align.check" type="galaxy.datatypes.mothur:AlignCheck" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.align.report" type="galaxy.datatypes.mothur:AlignReport" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.filter" type="galaxy.datatypes.mothur:LaneMask" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.dist" type="galaxy.datatypes.mothur:DistanceMatrix" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.tre" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.pair.dist" type="galaxy.datatypes.mothur:PairwiseDistanceMatrix" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.square.dist" type="galaxy.datatypes.mothur:SquareDistanceMatrix" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.lower.dist" type="galaxy.datatypes.mothur:LowerTriangleDistanceMatrix" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.ref.taxonomy" type="galaxy.datatypes.mothur:RefTaxonomy" display_in_upload="true" sniff_compressed_types="True"><converter file="ref_to_seq_taxonomy_converter.xml" target_datatype="mothur.seq.taxonomy"/></datatype><datatype extension="mothur.seq.taxonomy" type="galaxy.datatypes.mothur:RefTaxonomy" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.rdp.taxonomy" type="galaxy.datatypes.mothur:RefTaxonomy" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.cons.taxonomy" type="galaxy.datatypes.mothur:ConsensusTaxonomy" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.tax.summary" type="galaxy.datatypes.mothur:TaxonomySummary" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.freq" type="galaxy.datatypes.mothur:Frequency" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.quan" type="galaxy.datatypes.mothur:Quantile" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.filtered.quan" type="galaxy.datatypes.mothur:Quantile" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.masked.quan" type="galaxy.datatypes.mothur:Quantile" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.filtered.masked.quan" type="galaxy.datatypes.mothur:Quantile" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.axes" type="galaxy.datatypes.mothur:Axes" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.sff.flow" type="galaxy.datatypes.mothur:SffFlow" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.count_table" type="galaxy.datatypes.mothur:CountTable" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="neostore" type="galaxy.datatypes.neo4j:Neo4jDB" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="neostore.zip" type="galaxy.datatypes.neo4j:Neo4jDBzip" display_in_upload="true" sniff_compressed_types="True"><converter file="neostorezip_to_neostore_converter.xml" target_datatype="neostore"/></datatype><datatype extension="trackhub" type="galaxy.datatypes.tracks:UCSCTrackHub" display_in_upload="true" sniff_compressed_types="True"><display file="ucsc/trackhub.xml"/></datatype><datatype extension="blastxml" type="galaxy.datatypes.blast:BlastXml" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="blastdbn" type="galaxy.datatypes.blast:BlastNucDb" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="blastdbp" type="galaxy.datatypes.blast:BlastProtDb" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="blastdbd" type="galaxy.datatypes.blast:BlastDomainDb" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="lastdb" type="galaxy.datatypes.blast:LastDb" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="blastdbn5" type="galaxy.datatypes.blast:BlastNucDb5" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="blastdbp5" type="galaxy.datatypes.blast:BlastProtDb5" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="blastdbd5" type="galaxy.datatypes.blast:BlastDomainDb5" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="maskinfo-asn1" type="galaxy.datatypes.data:GenericAsn1" mimetype="text/plain" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="maskinfo-asn1-binary" type="galaxy.datatypes.binary:GenericAsn1Binary" mimetype="application/octet-stream" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="pssm-asn1" type="galaxy.datatypes.data:GenericAsn1" mimetype="text/plain" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="ptkscmp" type="galaxy.datatypes.plant_tribes:PlantTribesKsComponents" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="smat" type="galaxy.datatypes.plant_tribes:Smat" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="alohomora_gts" type="galaxy.datatypes.genetics:GenotypeMatrix" sniff_compressed_types="True"/><datatype extension="alohomora_map" type="galaxy.datatypes.tabular:Tabular" subclass="true" sniff_compressed_types="True"/><datatype extension="alohomora_maf" type="galaxy.datatypes.tabular:Tabular" subclass="true" sniff_compressed_types="True"/><datatype extension="alohomora_ped" type="galaxy.datatypes.tabular:Tabular" subclass="true" sniff_compressed_types="True"/><datatype extension="linkage_pedin" type="galaxy.datatypes.tabular:Tabular" subclass="true" sniff_compressed_types="True"/><datatype extension="linkage_datain" type="galaxy.datatypes.genetics:DataIn" sniff_compressed_types="True"/><datatype extension="linkage_map" type="galaxy.datatypes.genetics:MarkerMap" sniff_compressed_types="True"/><datatype extension="allegro_ihaplo" type="galaxy.datatypes.tabular:Tabular" sniff_compressed_types="True"/><datatype extension="allegro_descent" type="galaxy.datatypes.tabular:Tabular" sniff_compressed_types="True"/><datatype extension="allegro_fparam" type="galaxy.datatypes.genetics:AllegroLOD" sniff_compressed_types="True"/><datatype extension="ideaspre" type="galaxy.datatypes.genetics:IdeasPre" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="sbml" type="galaxy.datatypes.xml:Sbml" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="spalndbnp" type="galaxy.datatypes.spaln:SpalnNuclDb" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="spalndba" type="galaxy.datatypes.spaln:SpalnProtDb" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="dada2_dada" type="galaxy.datatypes.binary:RData" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="dada2_errorrates" type="galaxy.datatypes.binary:RData" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="dada2_mergepairs" type="galaxy.datatypes.binary:RData" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="dada2_sequencetable" type="galaxy.datatypes.tabular:Tabular" mimetype="application/text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="dada2_uniques" type="galaxy.datatypes.tabular:Tabular" mimetype="application/text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="ckpt" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="tgz" type="galaxy.datatypes.binary:Binary" subclass="true" mimetype="multipart/x-gzip" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="wav" type="galaxy.datatypes.media:Wav" display_in_upload="true" mimetype="audio/wav" sniff_compressed_types="True"/><datatype extension="mp3" type="galaxy.datatypes.media:Mp3" display_in_upload="true" mimetype="audio/mp3" sniff_compressed_types="True"/><datatype extension="mkv" type="galaxy.datatypes.media:Mkv" display_in_upload="true" mimetype="video/mkv" sniff_compressed_types="True"/><datatype extension="mp4" type="galaxy.datatypes.media:Mp4" display_in_upload="true" mimetype="video/mp4" sniff_compressed_types="True"/><datatype extension="flv" type="galaxy.datatypes.media:Flv" display_in_upload="true" mimetype="video/flv" sniff_compressed_types="True"/><datatype extension="mpg" type="galaxy.datatypes.media:Mpg" display_in_upload="true" mimetype="video/mpeg" sniff_compressed_types="True"/><datatype extension="textgrid" type="galaxy.datatypes.speech:TextGrid" display_in_upload="true" mimetype="text/plain" sniff_compressed_types="True"/><datatype extension="par" type="galaxy.datatypes.speech:BPF" display_in_upload="true" mimetype="text/plain-bas" sniff_compressed_types="True"/>
+              </registration>
+              <sniffers>
+                <sniffer type="galaxy.datatypes.plant_tribes:PlantTribesKsComponents"/><sniffer type="galaxy.datatypes.plant_tribes:Smat"/><sniffer type="galaxy.datatypes.mothur:Sabund"/><sniffer type="galaxy.datatypes.mothur:Otu"/><sniffer type="galaxy.datatypes.mothur:GroupAbund"/><sniffer type="galaxy.datatypes.mothur:SecondaryStructureMap"/><sniffer type="galaxy.datatypes.mothur:LowerTriangleDistanceMatrix"/><sniffer type="galaxy.datatypes.mothur:SquareDistanceMatrix"/><sniffer type="galaxy.datatypes.mothur:PairwiseDistanceMatrix"/><sniffer type="galaxy.datatypes.mothur:Oligos"/><sniffer type="galaxy.datatypes.mothur:Quantile"/><sniffer type="galaxy.datatypes.mothur:Frequency"/><sniffer type="galaxy.datatypes.mothur:LaneMask"/><sniffer type="galaxy.datatypes.mothur:RefTaxonomy"/><sniffer type="galaxy.datatypes.mothur:Axes"/><sniffer type="galaxy.datatypes.constructive_solid_geometry:PlyAscii"/><sniffer type="galaxy.datatypes.constructive_solid_geometry:PlyBinary"/><sniffer type="galaxy.datatypes.constructive_solid_geometry:VtkAscii"/><sniffer type="galaxy.datatypes.constructive_solid_geometry:VtkBinary"/><sniffer type="galaxy.datatypes.interval:ScIdx"/><sniffer type="galaxy.datatypes.tabular:Vcf"/><sniffer type="galaxy.datatypes.binary:TwoBit"/><sniffer type="galaxy.datatypes.binary:GeminiSQLite"/><sniffer type="galaxy.datatypes.binary:SQmass"/><sniffer type="galaxy.datatypes.binary:MzSQlite"/><sniffer type="galaxy.datatypes.binary:OSW"/><sniffer type="galaxy.datatypes.binary:PQP"/><sniffer type="galaxy.datatypes.binary:IdpDB"/><sniffer type="galaxy.datatypes.binary:ElibSQlite"/><sniffer type="galaxy.datatypes.binary:DlibSQlite"/><sniffer type="galaxy.datatypes.binary:BlibSQlite"/><sniffer type="galaxy.datatypes.binary:ChiraSQLite"/><sniffer type="galaxy.datatypes.binary:CuffDiffSQlite"/><sniffer type="galaxy.datatypes.binary:GAFASQLite"/><sniffer type="galaxy.datatypes.binary:NcbiTaxonomySQlite"/><sniffer type="galaxy.datatypes.binary:SQlite"/><sniffer type="galaxy.datatypes.binary:Cool"/><sniffer type="galaxy.datatypes.binary:MCool"/><sniffer type="galaxy.datatypes.binary:Loom"/><sniffer type="galaxy.datatypes.binary:Anndata"/><sniffer type="galaxy.datatypes.binary:Biom2"/><sniffer type="galaxy.datatypes.binary:H5"/><sniffer type="galaxy.datatypes.binary:Bam"/><sniffer type="galaxy.datatypes.binary:BamQuerynameSorted"/><sniffer type="galaxy.datatypes.binary:BamNative"/><sniffer type="galaxy.datatypes.binary:CRAM"/><sniffer type="galaxy.datatypes.binary:Sff"/><sniffer type="galaxy.datatypes.binary:Sra"/><sniffer type="galaxy.datatypes.binary:NetCDF"/><sniffer type="galaxy.datatypes.binary:DAA"/><sniffer type="galaxy.datatypes.binary:RMA6"/><sniffer type="galaxy.datatypes.binary:DMND"/><sniffer type="galaxy.datatypes.binary:BafTar"/><sniffer type="galaxy.datatypes.binary:TdfTar"/><sniffer type="galaxy.datatypes.binary:MassHunterTar"/><sniffer type="galaxy.datatypes.binary:MassLynxTar"/><sniffer type="galaxy.datatypes.binary:YepTar"/><sniffer type="galaxy.datatypes.binary:WiffTar"/><sniffer type="galaxy.datatypes.binary:Fast5ArchiveGz"/><sniffer type="galaxy.datatypes.binary:Fast5ArchiveBz2"/><sniffer type="galaxy.datatypes.binary:Fast5Archive"/><sniffer type="galaxy.datatypes.binary:PostgresqlArchive"/><sniffer type="galaxy.datatypes.binary:ICM"/><sniffer type="galaxy.datatypes.binary:Idat"/><sniffer type="galaxy.datatypes.binary:Trr"/><sniffer type="galaxy.datatypes.binary:Dcd"/><sniffer type="galaxy.datatypes.binary:Xtc"/><sniffer type="galaxy.datatypes.binary:Cpt"/><sniffer type="galaxy.datatypes.binary:Edr"/><sniffer type="galaxy.datatypes.binary:Vel"/><sniffer type="galaxy.datatypes.binary:Xlsx"/><sniffer type="galaxy.datatypes.binary:CompressedZipArchive"/><sniffer type="galaxy.datatypes.annotation:Augustus"/><sniffer type="galaxy.datatypes.triples:Rdf"/><sniffer type="galaxy.datatypes.blast:BlastXml"/><sniffer type="galaxy.datatypes.xml:Phyloxml"/><sniffer type="galaxy.datatypes.xml:Owl"/><sniffer type="galaxy.datatypes.xml:Sbml"/><sniffer type="galaxy.datatypes.proteomics:Dta2d"/><sniffer type="galaxy.datatypes.proteomics:Edta"/><sniffer type="galaxy.datatypes.proteomics:ConsensusXML"/><sniffer type="galaxy.datatypes.proteomics:IdXML"/><sniffer type="galaxy.datatypes.proteomics:FeatureXML"/><sniffer type="galaxy.datatypes.proteomics:MascotXML"/><sniffer type="galaxy.datatypes.proteomics:Mgf"/><sniffer type="galaxy.datatypes.proteomics:Ms2"/><sniffer type="galaxy.datatypes.proteomics:Msp"/><sniffer type="galaxy.datatypes.proteomics:MzData"/><sniffer type="galaxy.datatypes.proteomics:MzIdentML"/><sniffer type="galaxy.datatypes.proteomics:MzML"/><sniffer type="galaxy.datatypes.proteomics:MzQuantML"/><sniffer type="galaxy.datatypes.proteomics:MzTab"/><sniffer type="galaxy.datatypes.proteomics:MzTab2"/><sniffer type="galaxy.datatypes.proteomics:ParamXml"/><sniffer type="galaxy.datatypes.proteomics:MzXML"/><sniffer type="galaxy.datatypes.proteomics:NmrML"/><sniffer type="galaxy.datatypes.proteomics:Kroenik"/><sniffer type="galaxy.datatypes.proteomics:PepList"/><sniffer type="galaxy.datatypes.proteomics:PSMS"/><sniffer type="galaxy.datatypes.proteomics:PepXml"/><sniffer type="galaxy.datatypes.proteomics:ProtXML"/><sniffer type="galaxy.datatypes.proteomics:SPLib"/><sniffer type="galaxy.datatypes.proteomics:TandemXML"/><sniffer type="galaxy.datatypes.proteomics:ThermoRAW"/><sniffer type="galaxy.datatypes.proteomics:TraML"/><sniffer type="galaxy.datatypes.proteomics:TrafoXML"/><sniffer type="galaxy.datatypes.proteomics:UniProtXML"/><sniffer type="galaxy.datatypes.proteomics:XquestXML"/><sniffer type="galaxy.datatypes.proteomics:XquestSpecXML"/><sniffer type="galaxy.datatypes.proteomics:QCML"/><sniffer type="galaxy.datatypes.proteomics:Wiff"/><sniffer type="galaxy.datatypes.proteomics:PEFF"/><sniffer type="galaxy.datatypes.molecules:CML"/><sniffer type="galaxy.datatypes.xml:GenericXml"/><sniffer type="galaxy.datatypes.triples:HDT"/><sniffer type="galaxy.datatypes.triples:Turtle"/><sniffer type="galaxy.datatypes.triples:NTriples"/><sniffer type="galaxy.datatypes.triples:Jsonld"/><sniffer type="galaxy.datatypes.sequence:Maf"/><sniffer type="galaxy.datatypes.sequence:Lav"/><sniffer type="galaxy.datatypes.sequence:MemePsp"/><sniffer type="galaxy.datatypes.sequence:Fastg"/><sniffer type="galaxy.datatypes.sequence:csFasta"/><sniffer type="galaxy.datatypes.qualityscore:QualityScoreSOLiD"/><sniffer type="galaxy.datatypes.qualityscore:QualityScore454"/><sniffer type="galaxy.datatypes.molecules:SDF"/><sniffer type="galaxy.datatypes.molecules:PDB"/><sniffer type="galaxy.datatypes.molecules:MOL2"/><sniffer type="galaxy.datatypes.molecules:InChI"/><sniffer type="galaxy.datatypes.molecules:FPS"/><sniffer type="galaxy.datatypes.molecules:PQR"/><sniffer type="galaxy.datatypes.phylip:Phylip"/><sniffer type="galaxy.datatypes.sequence:Fasta"/><sniffer type="galaxy.datatypes.sequence:FastqCSSanger"/><sniffer type="galaxy.datatypes.sequence:FastqSanger"/><sniffer type="galaxy.datatypes.sequence:Fastq"/><sniffer type="galaxy.datatypes.interval:Wiggle"/><sniffer type="galaxy.datatypes.text:Html"/><sniffer type="galaxy.datatypes.images:Pdf"/><sniffer type="galaxy.datatypes.sequence:Axt"/><sniffer type="galaxy.datatypes.sequence:Genbank"/><sniffer type="galaxy.datatypes.interval:Bed"/><sniffer type="galaxy.datatypes.interval:CustomTrack"/><sniffer type="galaxy.datatypes.interval:Gtf"/><sniffer type="galaxy.datatypes.interval:Gff"/><sniffer type="galaxy.datatypes.interval:Gff3"/><sniffer type="galaxy.datatypes.tabular:Pileup"/><sniffer type="galaxy.datatypes.text:Paf"/><sniffer type="galaxy.datatypes.interval:Interval"/><sniffer type="galaxy.datatypes.tabular:Sam"/><sniffer type="galaxy.datatypes.data:Newick"/><sniffer type="galaxy.datatypes.data:Nexus"/><sniffer type="galaxy.datatypes.text:IQTree"/><sniffer type="galaxy.datatypes.text:Obo"/><sniffer type="galaxy.datatypes.text:Arff"/><sniffer type="galaxy.datatypes.text:Ipynb"/><sniffer type="galaxy.datatypes.text:Biom1"/><sniffer type="galaxy.datatypes.text:ImgtJson"/><sniffer type="galaxy.datatypes.text:GeoJson"/><sniffer type="galaxy.datatypes.text:Json"/><sniffer type="galaxy.datatypes.genetics:GenotypeMatrix"/><sniffer type="galaxy.datatypes.genetics:DataIn"/><sniffer type="galaxy.datatypes.genetics:MarkerMap"/><sniffer type="galaxy.datatypes.genetics:AllegroLOD"/><sniffer type="galaxy.datatypes.sequence:RNADotPlotMatrix"/><sniffer type="galaxy.datatypes.sequence:DotBracket"/><sniffer type="galaxy.datatypes.tabular:ConnectivityTable"/><sniffer type="galaxy.datatypes.tabular:CSV"/><sniffer type="galaxy.datatypes.tabular:TSV"/><sniffer type="galaxy.datatypes.tabular:MatrixMarket"/><sniffer type="galaxy.datatypes.msa:Hmmer2"/><sniffer type="galaxy.datatypes.msa:Hmmer3"/><sniffer type="galaxy.datatypes.msa:Stockholm_1_0"/><sniffer type="galaxy.datatypes.msa:MauveXmfa"/><sniffer type="galaxy.datatypes.msa:InfernalCM"/><sniffer type="galaxy.datatypes.annotation:SnapHmm"/><sniffer type="galaxy.datatypes.microarrays:Cel"/><sniffer type="galaxy.datatypes.microarrays:Gpr"/><sniffer type="galaxy.datatypes.microarrays:Gal"/><sniffer type="galaxy.datatypes.binary:RData"/><sniffer type="galaxy.datatypes.images:Jpg"/><sniffer type="galaxy.datatypes.images:Png"/><sniffer type="galaxy.datatypes.images:Tiff"/><sniffer type="galaxy.datatypes.images:Bmp"/><sniffer type="galaxy.datatypes.images:Gif"/><sniffer type="galaxy.datatypes.images:Im"/><sniffer type="galaxy.datatypes.images:Pcd"/><sniffer type="galaxy.datatypes.images:Pcx"/><sniffer type="galaxy.datatypes.images:Ppm"/><sniffer type="galaxy.datatypes.images:Psd"/><sniffer type="galaxy.datatypes.images:Xbm"/><sniffer type="galaxy.datatypes.images:Rgb"/><sniffer type="galaxy.datatypes.images:Pbm"/><sniffer type="galaxy.datatypes.images:Pgm"/><sniffer type="galaxy.datatypes.images:Xpm"/><sniffer type="galaxy.datatypes.images:Eps"/><sniffer type="galaxy.datatypes.images:Rast"/><sniffer type="galaxy.datatypes.media:Wav"/><sniffer type="galaxy.datatypes.media:Mkv"/><sniffer type="galaxy.datatypes.media:Mp3"/><sniffer type="galaxy.datatypes.media:Mp4"/><sniffer type="galaxy.datatypes.media:Flv"/><sniffer type="galaxy.datatypes.media:Mpg"/><sniffer type="galaxy.datatypes.speech:TextGrid"/><sniffer type="galaxy.datatypes.speech:BPF"/><sniffer type="galaxy.datatypes.binary:OxliCountGraph"/><sniffer type="galaxy.datatypes.binary:OxliNodeGraph"/><sniffer type="galaxy.datatypes.binary:OxliTagSet"/><sniffer type="galaxy.datatypes.binary:OxliStopTags"/><sniffer type="galaxy.datatypes.binary:OxliSubset"/><sniffer type="galaxy.datatypes.binary:OxliGraphLabels"/><sniffer type="galaxy.datatypes.neo4j:Neo4jDBzip"/>
+              </sniffers>
+            </datatypes>
+            
\ No newline at end of file
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/irods_upload.xml	Fri May 21 09:51:30 2021 +0000
@@ -0,0 +1,66 @@
+<tool id="irods_upload" name="iRODS Upload" version="0.1" workflow_compatible="false">
+	<description>Upload your files to iRODS from Galaxy</description>
+	<requirements>
+		<requirement type="package" version="0.8.2">python-irodsclient</requirement>
+		<requirement type="package" version="0.1.0">tk</requirement>
+	</requirements>
+
+	<command interpreter="python">
+		## using CHEETAH
+		#import json
+		#set params = {}
+		#set params["irods_host"] = str($custom_host)
+		#set params["irods_port"] = str($custom_port)
+		#set params["irods_zone"] = str($custom_zone)
+		##if $irods_config.typeiRODS == "use_any_irods"
+		##set params["irods_host"] = str($irods_config.custom_host)
+		##set params["irods_port"] = str($irods_config.custom_port)
+		##set params["irods_zone"] = str($irods_config.custom_zone)
+		##end if
+		##if $irods_config.typeiRODS == "use_tug_irods"
+		##set params["irods_host"] = "data.cyverse.tugraz.at"
+		##set params["irods_port"] = "1247"
+		##set params["irods_zone"] = "TUG"
+		##end if
+		## set up Galaxy params
+		#set params["galaxy_user"] = str($__user_name__)
+		#set params["job_id"] = str($output.creating_job.id)
+		#set params["out_dir"] = str($output.files_path)
+		#set params["out_file"] = str($output)
+		#set params["up_file"] = str($up_file.name)
+		#set params["up_file_path"] = str($up_file)
+		#set params["galaxy_root"] = str($GALAXY_ROOT_DIR)
+		#set params["galaxy_datatypes"] = str($GALAXY_DATATYPES_CONF_FILE)
+		#set params["tool_type"] = "up"
+		#set $params=json.dumps($params)
+		main.py '$params'
+	</command>
+
+	<inputs>
+		<param name="custom_host" type="text" value="data.cyverse.tugraz.at" label="iRODS Host:" />
+		<param name="custom_port" type="text" value="1247" label="iRODS Port:" />
+		<param name="custom_zone" type="text" value="TUG" label="iRODS Zone:" />
+		<param name="up_file" type="data" value="" label="Galaxy file to upload" />
+	</inputs>
+
+	<outputs>
+		<data name="output" auto_format="true" />
+	</outputs>
+
+	<help>
+Upload RODS
+
+	</help>
+	 <citations>
+        	<citation type="bibtex">
+@misc{Upload-iRODS,
+  author = {Hohensinner, Richard},
+  year = {2021},
+  title = {iRODSTools},
+  publisher = {GitLab},
+  journal = {GitLab repository},
+  url = {https://gitlab.tugraz.at/D463A320ED7901AB/galaxy_irods_tools},
+}
+		</citation>
+    	</citations>
+</tool>
Binary file login.png has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/main.py	Fri May 21 09:51:30 2021 +0000
@@ -0,0 +1,569 @@
+___author___ = "Richard Hohensinner"
+___created___ = "04.02.2021"
+___last_modified___ = "20.05.2021"
+
+# general imports
+import os, sys, json
+from shutil import copyfile
+from datetime import datetime
+
+# irods-client imports
+from irods.session import iRODSSession
+from irods.models import Collection, DataObject
+from irods.query import SpecificQuery
+
+# Tkinter imports
+from tkinter import messagebox, Label, Button, Entry, Listbox, Tk, PhotoImage, Grid
+
+# global variables
+session = None
+file_path_list = []
+selected_file = ""
+session_success = False
+selection_success = False
+iRODSCredentials = {"host": "", "port": "", "user": "", "pw": "", "zone": ""}
+
+
+########################################################################################################################
+#   Main function of the iRODS tools
+#
+#   IN:
+#   JSON Object params (argv[1])
+#   OUT:
+#
+########################################################################################################################
+def main():
+
+    # check input parameters
+    if len(sys.argv) == 2:
+        params = json.loads(sys.argv[1])
+    else:
+        raise Exception("Invalid Parameters submitted!")
+
+    tool_type = params["tool_type"]
+
+    try:
+        if params["tool_type"] != "up" and params["tool_type"] != "down":
+            raise Exception("Invalid tool-type parameter submitted!")
+    except:
+        raise Exception("No tool-type parameter submitted!")
+    is_download_call = True
+    if tool_type == "up":
+        is_download_call = False
+
+    # check params for integrity
+    result_string, params_faulty = check_params(params)
+
+    if params_faulty:
+        raise Exception(result_string)
+
+    global iRODSCredentials, session_success, selected_file, selection_success
+    iRODSCredentials["host"] = params["irods_host"]
+    iRODSCredentials["port"] = params["irods_port"]
+    iRODSCredentials["zone"] = params["irods_zone"]
+
+    # create login window
+    make_login_window()
+    # check tool settings and start tool execution
+    if session_success:
+        # initialize download tool
+        if params["tool_type"] == "down":
+
+            if params["selection_type"] == "explorer":
+                make_file_select_window()
+            else:
+                if (params["file_path"] != ""): #and ("/" in params["file_path"]):
+                    selected_file = params["file_path"]
+                else:
+                    raise Exception("Invalid File Path submitted!")
+
+            if selection_success or params["selection_type"] == "path":
+                params["user"] = iRODSCredentials["pw"]
+                params["password"] = iRODSCredentials["user"]
+                # start download routine
+                handle_download_call(params)
+            else:
+                raise Exception("File Selection failed (No file selected)")
+
+        # initialize upload tool
+        elif params["tool_type"] == "up":
+
+            if session_success:
+                params["user"] = iRODSCredentials["pw"]
+                params["password"] = iRODSCredentials["user"]
+                # start upload routine
+                handle_upload_call(params)
+            else:
+                raise Exception("Logging into iRODS failed")
+    else:
+        raise Exception("Logging into iRODS failed")
+# -------------------------------------------------------------------------------------------------------------------- #
+
+
+########################################################################################################################
+#   Login Window class for Tkinter
+#
+#   IN:
+#   Tk Window win
+#   OUT:
+#   (sets global variables iRODSCredentials, session and session_success)
+#
+########################################################################################################################
+class LoginWindow:
+    def __init__(self, win):
+        self.window = win
+        self.lbl1 = Label(win, text='iRODS Username:')
+        self.lbl2 = Label(win, text='iRODS Password:')
+        self.t1 = Entry(bd=3)
+        self.t2 = Entry(show="*")
+        self.b1 = Button(win, text='Login', command=self.login)
+
+        self.window.grid()
+        Grid.rowconfigure(self.window, 0, weight=1)
+        Grid.rowconfigure(self.window, 1, weight=1)
+        Grid.rowconfigure(self.window, 2, weight=1)
+        Grid.rowconfigure(self.window, 3, weight=1)
+        Grid.rowconfigure(self.window, 4, weight=1)
+        Grid.columnconfigure(self.window, 0, weight=1)
+
+        self.lbl1.grid(row=0, column=0, padx="20", pady="1", sticky="w")
+        self.t1.grid(row=1, column=0, padx="10", pady="1", sticky="nsew")
+        self.lbl2.grid(row=2, column=0, padx="20", pady="1", sticky="w")
+        self.t2.grid(row=3, column=0, padx="10", pady="1", sticky="nsew")
+        self.b1.grid(row=4, column=0, padx="50", pady="10", sticky="nsew")
+
+    def login(self):
+        global iRODSCredentials
+        user = str(self.t1.get())
+        password = str(self.t2.get())
+        if user == "" or password == "":
+            self.window.iconify()
+            messagebox.showerror("Error", "Username or Password empty!")
+            self.window.deiconify()
+            return
+        else:
+            iRODSCredentials["user"] = user
+            iRODSCredentials["pw"] = password
+
+        get_irods_session(self.window)
+        if not session_success:
+            return
+
+        self.window.destroy()
+# -------------------------------------------------------------------------------------------------------------------- #
+
+
+########################################################################################################################
+#   File Selection Window class for Tkinter
+#
+#   IN:
+#   Tk Window win
+#   OUT:
+#   (sets global variables selected_file and selection_success)
+#
+########################################################################################################################
+class FileSelectWindow:
+    def __init__(self, win):
+        global session, iRODSCredentials
+        self.session = session
+        self.window = win
+        self.b1 = Button(win, text='Select', command=self.select)
+        self.lb1 = Listbox(win)
+
+        self.window.grid()
+        Grid.rowconfigure(self.window, 0, weight=1)
+        Grid.rowconfigure(self.window, 1, weight=1)
+        Grid.columnconfigure(self.window, 0, weight=1)
+
+        self.lb1.grid(row=0, column=0, padx="20", pady="1", sticky="nswe")
+        self.b1.grid(row=1, column=0, padx="50", pady="1", sticky="ew")
+
+        coll = session.collections.get("/" + iRODSCredentials["zone"] + "/" + "home" + "/" + iRODSCredentials["user"])
+        file_list = []
+
+        self.get_files_from_collections(coll, file_list)
+
+        for counter in range(len(file_list)):
+            self.lb1.insert(counter, file_list[counter])
+
+    def get_files_from_collections(self, coll, file_list):
+        for obj in coll.data_objects:
+            file_list.append(obj.path)
+
+        for col in coll.subcollections:
+            self.get_files_from_collections(col, file_list)
+
+    def select(self):
+        global session, selected_file, selection_success
+        try:
+            selection = self.lb1.get(self.lb1.curselection())
+        except:
+            self.window.iconify()
+            messagebox.showerror("Error", "No file selected!")
+            self.window.deiconify()
+            return
+
+        selected_file = selection
+        selection_success = True
+        self.window.destroy()
+# -------------------------------------------------------------------------------------------------------------------- #
+
+
+########################################################################################################################
+#   Creates an iRODS session and sets the global session variable
+#
+#   IN:
+#   Tk Window window
+#
+#   OUT:
+#
+########################################################################################################################
+def get_irods_session(window):
+    global iRODSCredentials
+    host = iRODSCredentials["host"]
+    port = iRODSCredentials["port"]
+    user = iRODSCredentials["user"]
+    password = iRODSCredentials["pw"]
+    zone = iRODSCredentials["zone"]
+
+    iRODSsession = get_iRODS_connection(host=host, port=port, user=user, password=password, zone=zone)
+    global session, session_success
+    try:
+        coll = iRODSsession.collections.get("/" + zone + "/" + "home" + "/" + user)
+    except Exception:
+        window.iconify()
+        messagebox.showerror("Error", "Invalid Authentification")
+        window.deiconify()
+        return
+
+    if coll:
+        session = iRODSsession
+        session_success = True
+# -------------------------------------------------------------------------------------------------------------------- #
+
+
+########################################################################################################################
+#   Helper function to initialize Login Window classes and Tk windows
+#
+#   IN:
+#
+#   OUT:
+#
+########################################################################################################################
+def make_login_window():
+    window = Tk()
+    LoginWindow(window)
+    window.title('iRODS Login')
+    window.geometry("450x225+10+10")
+    window.minsize(450, 225)
+    window.tk.call('wm', 'iconphoto', window._w, PhotoImage(file='/home/richard/git/galaxy_irods_tools/login.png'))
+    # alternative options:
+    # window.iconphoto(False, PhotoImage(file='/path/to/ico/icon.png'))
+    # window.iconbitmap("/home/richard/git/galaxy_irods_tools/login.ico")
+    window.mainloop()
+# -------------------------------------------------------------------------------------------------------------------- #
+
+
+########################################################################################################################
+#   Helper function to initialize File Selection Window classes and Tk windows
+#
+#   IN:
+#
+#   OUT:
+#
+########################################################################################################################
+def make_file_select_window():
+    window = Tk()
+    FileSelectWindow(window)
+    window.title('iRODS File Select')
+    window.geometry("450x225+10+10")
+    window.minsize(450, 225)
+    window.mainloop()
+# -------------------------------------------------------------------------------------------------------------------- #
+
+
+########################################################################################################################
+#   Checks whether arguments are valid and returns true/false depending on params
+#
+#   IN:
+#   Dict params
+#
+#   OUT:
+#   String res_string
+#   Bool res_bool
+########################################################################################################################
+def check_params(params):
+    res_string = ""
+    res_bool = False
+
+    try:
+        if params["irods_host"] == "":
+            res_string += "Host empty!\n"
+            res_bool = True
+        if params["irods_port"] == "":
+            res_string += "Port empty!\n"
+            res_bool = True
+        if params["irods_zone"] == "":
+            res_string += "Zone empty!\n"
+            res_bool = True
+        if params["selection_type"] == "path" and params["file_path"] == "":
+            res_string += "Missing file path!\n"
+            res_bool = True
+    except:
+        raise Exception("Invalid/Missing Parameters")
+
+    return res_string, res_bool
+# -------------------------------------------------------------------------------------------------------------------- #
+
+
+########################################################################################################################
+#   Function to handle iRODS download calls
+#
+#   IN:
+#   Dict params
+#
+#   OUT:
+#
+########################################################################################################################
+def handle_download_call(params):
+
+    global session, selected_file
+
+    # check if /ZONE/USER/...FILE... pattern is valid
+    if len(selected_file.split("/")) < 2:
+        raise Exception("Path to file is not valid in iRODS")
+
+    file_list = []
+
+    # check if file is a directory
+    if "." not in selected_file:
+        try:
+            coll = session.collections.get(selected_file)
+            for file in coll.data_objects:
+                file_list.append(file.path)
+        except:
+            raise Exception("Invalid directory path specified!")
+    else:
+        file_list.append(selected_file)
+
+    # get registry file
+    reg_file = ""
+    for dirpath, dirnames, filenames in os.walk(params["galaxy_root"]):
+        for fn in filenames:
+            if fn == "irods_galaxy_registry.xml":
+                reg_file = os.path.join(dirpath, fn)
+            if reg_file != "":
+                break
+        if reg_file != "":
+            break
+
+    # handle download for all files in file_list
+    for file in file_list:
+
+        file_to_get = file
+
+        # handle path and file name
+        name_file_to_get = file_to_get.split("/")[-1]
+        path_file_to_get = "/".join(file_to_get.split("/")[0:len(file_to_get.split("/")) - 1])
+
+        # check iRODS filesystem
+        check_iRODS_destination(session, path_file_to_get, name_file_to_get)
+
+        # get file object from iRODS
+        iRODS_file_object = session.data_objects.get(path_file_to_get + "/" + name_file_to_get)
+        input_file = iRODS_file_object.open("r+")
+        output_file = open(name_file_to_get, "wb")
+        output_file.write(input_file.read())
+
+        input_file.close()
+        output_file.close()
+
+        abs_file_path = os.path.abspath(name_file_to_get)
+
+        file_type = str(name_file_to_get.split(".")[-1])
+
+        file_content = {"uuid": None,
+                        "file_type": "auto",
+                        "space_to_tab": False,
+                        "dbkey": "?",
+                        "to_posix_lines": True,
+                        "ext": file_type,
+                        "path": abs_file_path,
+                        "in_place": True,
+                        "dataset_id": params["job_id"],
+                        "type": "file",
+                        "is_binary": False,
+                        "link_data_only": "copy_files",
+                        "name": name_file_to_get
+                        }
+
+        with open("temporal.json", "w") as fileParams:
+            fileParams.write(json.dumps(file_content))
+        fileParams.close()
+
+        # load file into Galaxy by using the integrated upload tool - Preparation
+        python_command = params["galaxy_root"] + "/tools/data_source/upload.py"
+        arg1 = params["galaxy_root"]
+        arg2 = params["galaxy_datatypes"]
+        arg3 = os.path.abspath(fileParams.name)
+        arg4 = params["job_id"] + ":" + params["out_dir"] + ":" + params["out_file"]
+
+        # copy sample registry.xml to working directory
+        copyfile(reg_file, params["galaxy_datatypes"])
+
+        # activate environment for new process call and call the python upload command either both with
+        sys.path.append(params["galaxy_root"] + "/lib")
+        os.system("python -c \'import sys;sys.path.append(\"" + params["galaxy_root"] + "/lib\")\'" + " python " +
+                  python_command + " " + arg1 + " " + arg2 + " " + arg3 + " " + arg4)
+    
+    # close connection
+    session.cleanup()
+# -------------------------------------------------------------------------------------------------------------------- #
+
+
+########################################################################################################################
+#   Function to handle iRODS upload calls
+#
+#   IN:
+#   Dict params
+#
+#   OUT:
+#
+########################################################################################################################
+def handle_upload_call(params):
+
+    global session, iRODSCredentials
+
+    path_to_file = params["up_file_path"]
+    name_of_file = params["up_file"]
+
+    coll_path = "/" + iRODSCredentials["zone"] + "/home/" + iRODSCredentials["user"] + "/galaxyupload"
+    try:
+        coll = session.collections.get(coll_path)
+    except:
+        coll = session.collections.create(coll_path)
+
+    now = datetime.now()
+
+    # dd/mm/YY
+    day = now.strftime("%d%m%Y")
+    time = now.strftime("%H%M%S")
+
+    coll_path = coll_path + "/" + day
+
+    try:
+        coll = session.collections.get(coll_path)
+    except:
+        coll = session.collections.create(coll_path)
+
+    irods_file_name = time + "_" + name_of_file
+    iRODS_file_object = session.data_objects.create(coll_path + "/" + irods_file_name)
+    iRODS_file_object = session.data_objects.get(coll_path + "/" + irods_file_name)
+
+    irods_file = iRODS_file_object.open("w")
+    galaxy_file = open(path_to_file, "rb")
+    content = galaxy_file.read()
+    irods_file.write(content)
+
+    # TODO can't close session without writing process finished - but reading/writing happens async.
+    # session.cleanup()
+
+    pass
+# -------------------------------------------------------------------------------------------------------------------- #
+
+
+########################################################################################################################
+#   Function to initialize an iRODS Session - will raise an Exception if timeout is longer than 2 seconds
+#
+#   IN:
+#   String host
+#   String port
+#   String user
+#   String password
+#   String zone
+#
+#   OUT:
+#   iRODSSession-object session
+########################################################################################################################
+def get_iRODS_connection(host, port, user, password, zone):
+
+    # initialize timeout checker - fires after 2 secs
+    import signal
+    signal.signal(signal.SIGALRM, timeout_checker)
+    signal.alarm(2)
+
+    try:
+        session = iRODSSession(host=host, port=port, user=user, password=password, zone=zone)
+    except Exception:
+        raise Exception("There was a timeout creating the iRODS session")
+
+    # void/reset alarm
+    signal.alarm(0)
+
+    return session
+# -------------------------------------------------------------------------------------------------------------------- #
+
+
+########################################################################################################################
+#   Helper function to raise timeout exception when SIGALRM fires
+#
+#   IN:
+#
+#   OUT:
+#
+########################################################################################################################
+def timeout_checker():
+
+    raise Exception("iRODS session timeout")
+# -------------------------------------------------------------------------------------------------------------------- #
+
+
+########################################################################################################################
+#   Function to check if file exists in iRODS
+#
+#   IN:
+#   String path
+#
+#   OUT:
+#   Bool ret_bool
+#
+########################################################################################################################
+def check_if_file_exists(path):
+
+    if os.path.isfile(path):
+        ret_bool = True
+    else:
+        ret_bool = False
+
+    return ret_bool
+# -------------------------------------------------------------------------------------------------------------------- #
+
+
+########################################################################################################################
+#   Function to check iRODS destination
+#
+#   IN:
+#   iRODSSession-object session
+#   String path
+#   String name
+#
+#   OUT:
+#   Bool ret_bool
+#
+########################################################################################################################
+def check_iRODS_destination(session, path, name):
+
+    try:
+        session.collections.get(path.rstrip("/"))
+    except Exception:
+        raise Exception("Collection doesn't exist in iRODS file system")
+
+    try:
+        session.data_objects.get(path.rstrip("/") + "/" + name)
+    except Exception:
+        raise Exception("File doesn't exist in iRODS file system")
+# -------------------------------------------------------------------------------------------------------------------- #
+
+
+if __name__ == "__main__":
+    main()
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/registry.xml	Fri May 21 09:51:30 2021 +0000
@@ -0,0 +1,10 @@
+<?xml version="1.0"?>
+            <datatypes>
+              <registration converters_path="lib/galaxy/datatypes/converters" display_path="display_applications">
+                <datatype extension="ab1" type="galaxy.datatypes.binary:Ab1" mimetype="application/octet-stream" display_in_upload="true" description="A binary sequence file in 'ab1' format with a '.ab1' file extension.  You must manually select this 'File Format' when uploading the file." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Ab1" sniff_compressed_types="True"/><datatype extension="afg" type="galaxy.datatypes.assembly:Amos" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_cog_profile" type="galaxy.datatypes.anvio:AnvioComposite" display_in_upload="false" subclass="true" sniff_compressed_types="True"/><datatype extension="anvio_composite" type="galaxy.datatypes.anvio:AnvioComposite" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_classifier" type="galaxy.datatypes.data:Data" display_in_upload="false" subclass="true" sniff_compressed_types="True"/><datatype extension="anvio_contigs_db" type="galaxy.datatypes.anvio:AnvioContigsDB" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_db" type="galaxy.datatypes.anvio:AnvioDB" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_genomes_db" type="galaxy.datatypes.anvio:AnvioGenomesDB" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_pan_db" type="galaxy.datatypes.anvio:AnvioPanDB" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_pfam_profile" type="galaxy.datatypes.anvio:AnvioComposite" display_in_upload="false" subclass="true" sniff_compressed_types="True"/><datatype extension="anvio_profile_db" type="galaxy.datatypes.anvio:AnvioProfileDB" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_samples_db" type="galaxy.datatypes.anvio:AnvioSamplesDB" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_state" type="galaxy.datatypes.text:Json" mimetype="application/json" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_structure_db" type="galaxy.datatypes.anvio:AnvioStructureDB" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="anvio_variability" type="galaxy.datatypes.tabular:TSV" display_in_upload="false" subclass="true" sniff_compressed_types="True"/><datatype extension="arff" type="galaxy.datatypes.text:Arff" mimetype="text/plain" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="paf" type="galaxy.datatypes.text:Paf" mimetype="text/plain" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gfa1" type="galaxy.datatypes.text:Gfa1" mimetype="text/plain" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="asn1" type="galaxy.datatypes.data:GenericAsn1" mimetype="text/plain" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="asn1-binary" type="galaxy.datatypes.binary:GenericAsn1Binary" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="axt" type="galaxy.datatypes.sequence:Axt" display_in_upload="true" description="blastz pairwise alignment format.  Each alignment block in an axt file contains three lines: a summary line and 2 sequence lines.  Blocks are separated from one another by blank lines.  The summary line contains chromosomal position and size information about the alignment. It consists of 9 required fields." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Axt" sniff_compressed_types="True"/><datatype extension="fli" type="galaxy.datatypes.tabular:FeatureLocationIndex" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="bam" type="galaxy.datatypes.binary:Bam" mimetype="application/octet-stream" display_in_upload="true" description="A binary file compressed in the BGZF format with a '.bam' file extension." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#BAM" sniff_compressed_types="True"><converter file="bam_to_bai.xml" target_datatype="bai"/><converter file="bam_to_bigwig_converter.xml" target_datatype="bigwig"/><converter file="to_qname_sorted_bam.xml" target_datatype="qname_sorted.bam"/><display file="ucsc/bam.xml"/><display file="ensembl/ensembl_bam.xml"/><display file="igv/bam.xml"/><display file="igb/bam.xml"/><display file="iobio/bam.xml"/></datatype><datatype extension="bai" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="qname_input_sorted.bam" type="galaxy.datatypes.binary:BamInputSorted" mimetype="application/octet-stream" display_in_upload="false" description="A binary file compressed in the BGZF format with a '.bam' file extension and sorted based on the aligner output." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#BAM" sniff_compressed_types="True"></datatype><datatype extension="qname_sorted.bam" type="galaxy.datatypes.binary:BamQuerynameSorted" mimetype="application/octet-stream" display_in_upload="true" description="A binary file compressed in the BGZF format with a '.bam' file extension and sorted by queryname." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#BAM" sniff_compressed_types="True"></datatype><datatype extension="unsorted.bam" type="galaxy.datatypes.binary:BamNative" mimetype="application/octet-stream" display_in_upload="true" description="A binary file compressed in the BGZF format with a '.bam' file extension." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#BAM" sniff_compressed_types="True"><converter file="bam_to_bigwig_converter.xml" target_datatype="bigwig"/><converter file="to_coordinate_sorted_bam.xml" target_datatype="bam"/><converter file="to_qname_sorted_bam.xml" target_datatype="qname_sorted.bam"/></datatype><datatype extension="probam" type="galaxy.datatypes.binary:ProBam" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="cram" type="galaxy.datatypes.binary:CRAM" mimetype="application/octet-stream" display_in_upload="true" description="CRAM is a file format for highly efficient and tunable reference-based compression of alignment data." description_url="http://www.ebi.ac.uk/ena/software/cram-usage" sniff_compressed_types="True"><converter file="cram_to_bam_converter.xml" target_datatype="bam"/></datatype><datatype extension="bed" type="galaxy.datatypes.interval:Bed" display_in_upload="true" description="BED format provides a flexible way to define the data lines that are displayed in an annotation track. BED lines have three required columns and nine additional optional columns. The three required columns are chrom, chromStart and chromEnd." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Bed" sniff_compressed_types="True"><converter file="bed_to_gff_converter.xml" target_datatype="gff"/><converter file="bed_to_bgzip_converter.xml" target_datatype="bgzip"/><converter file="bed_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/><converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/><converter file="bed_to_fli_converter.xml" target_datatype="fli"/><display file="igb/bed.xml"/></datatype><datatype extension="bedgraph" type="galaxy.datatypes.interval:BedGraph" display_in_upload="true" sniff_compressed_types="True"><converter file="bedgraph_to_bigwig_converter.xml" target_datatype="bigwig"/><display file="igb/bedgraph.xml"/></datatype><datatype extension="bedstrict" type="galaxy.datatypes.interval:BedStrict" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="bed6" type="galaxy.datatypes.interval:Bed6" display_in_upload="true" sniff_compressed_types="True"></datatype><datatype extension="bed12" type="galaxy.datatypes.interval:Bed12" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="probed" type="galaxy.datatypes.interval:ProBed" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="len" type="galaxy.datatypes.chrominfo:ChromInfo" display_in_upload="true" sniff_compressed_types="True"><converter file="len_to_linecount.xml" target_datatype="linecount"/></datatype><datatype extension="daa" type="galaxy.datatypes.binary:DAA" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rma6" type="galaxy.datatypes.binary:RMA6" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="dmnd" type="galaxy.datatypes.binary:DMND" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="idat" type="galaxy.datatypes.binary:Idat" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="bigbed" type="galaxy.datatypes.binary:BigBed" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"><display file="ucsc/bigbed.xml"/><display file="igb/bb.xml"/></datatype><datatype extension="bigwig" type="galaxy.datatypes.binary:BigWig" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"><display file="ucsc/bigwig.xml"/><display file="igb/bigwig.xml"/><display file="igv/bigwig.xml"/></datatype><datatype extension="cxb" type="galaxy.datatypes.binary:Binary" mimetype="application/octet-stream" subclass="true" display_in_upload="true" description="Cuffquant output format" sniff_compressed_types="True"/><datatype extension="chrint" type="galaxy.datatypes.interval:ChromatinInteractions" display_in_upload="true" sniff_compressed_types="True"><converter file="interval_to_bgzip_converter.xml" target_datatype="bgzip"/><converter file="interval_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/><converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/></datatype><datatype extension="csv" type="galaxy.datatypes.tabular:CSV" display_in_upload="true" sniff_compressed_types="True"><converter file="csv_to_tabular.xml" target_datatype="tabular"/></datatype><datatype extension="tsv" type="galaxy.datatypes.tabular:TSV" display_in_upload="true" sniff_compressed_types="True"><converter file="tabular_to_csv.xml" target_datatype="csv"/></datatype><datatype extension="intermine_tabular" type="galaxy.datatypes.tabular:TSV" subclass="true" display_in_upload="true" sniff_compressed_types="True"><display file="intermine/intermine_simple.xml"/></datatype><datatype extension="customtrack" type="galaxy.datatypes.interval:CustomTrack" sniff_compressed_types="True"/><datatype extension="bowtie_color_index" type="galaxy.datatypes.ngsindex:BowtieColorIndex" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="bowtie_base_index" type="galaxy.datatypes.ngsindex:BowtieBaseIndex" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="csfasta" type="galaxy.datatypes.sequence:csFasta" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="data" type="galaxy.datatypes.data:Data" mimetype="application/octet-stream" max_optional_metadata_filesize="1048576" sniff_compressed_types="True"/><datatype extension="binary" type="galaxy.datatypes.binary:Binary" mimetype="application/octet-stream" max_optional_metadata_filesize="1048576" sniff_compressed_types="True"/><datatype extension="d3_hierarchy" type="galaxy.datatypes.text:Json" mimetype="application/json" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="imgt.json" type="galaxy.datatypes.text:ImgtJson" mimetype="application/json" display_in_upload="True" sniff_compressed_types="True"/><datatype extension="geojson" type="galaxy.datatypes.text:GeoJson" mimetype="application/json" display_in_upload="True" sniff_compressed_types="True"/><datatype extension="data_manager_json" type="galaxy.datatypes.text:Json" mimetype="application/json" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="dbn" type="galaxy.datatypes.sequence:DotBracket" display_in_upload="true" description="Dot-Bracket format is a text-based format for storing both an RNA sequence and its corresponding 2D structure." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Dbn" sniff_compressed_types="True"/><datatype extension="fai" type="galaxy.datatypes.tabular:Tabular" display_in_upload="true" subclass="true" description="A Fasta Index File is a text file consisting of lines each with five TAB-delimited columns : Name, Length, offset, linebases, Linewidth" description_url="http://www.htslib.org/doc/faidx.html" sniff_compressed_types="True"/><datatype extension="fasta" auto_compressed_types="gz" type="galaxy.datatypes.sequence:Fasta" display_in_upload="true" description="A sequence in FASTA format consists of a single-line description, followed by lines of sequence data. The first character of the description line is a greater-than ('&gt;') symbol in the first column. All lines should be shorter than 80 characters." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Fasta" sniff_compressed_types="True"><converter file="fasta_to_tabular_converter.xml" target_datatype="tabular"/><converter file="fasta_to_bowtie_base_index_converter.xml" target_datatype="bowtie_base_index"/><converter file="fasta_to_bowtie_color_index_converter.xml" target_datatype="bowtie_color_index"/><converter file="fasta_to_2bit.xml" target_datatype="twobit"/><converter file="fasta_to_len.xml" target_datatype="len"/><converter file="fasta_to_fai.xml" target_datatype="fai"/><display file="igv/genome_fasta.xml" inherit="true"/></datatype><datatype extension="fastg" type="galaxy.datatypes.sequence:Fastg" display_in_upload="true" description="fastg format faithfully represents genome assemblies in the face of allelic polymorphism and assembly uncertainty" description_url="http://fastg.sourceforge.net/FASTG_Spec_v1.00.pdf" sniff_compressed_types="True"/><datatype extension="fastq" auto_compressed_types="gz,bz2" type="galaxy.datatypes.sequence:Fastq" display_in_upload="true" description="FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Fastq" sniff_compressed_types="True"><converter file="fastq_to_fqtoc.xml" target_datatype="fqtoc"/></datatype><datatype extension="fastqsanger" auto_compressed_types="gz,bz2" type="galaxy.datatypes.sequence:FastqSanger" display_in_upload="true" sniff_compressed_types="True"><converter file="fastq_to_fqtoc.xml" target_datatype="fqtoc"/></datatype><datatype extension="fastqsolexa" auto_compressed_types="gz,bz2" type="galaxy.datatypes.sequence:FastqSolexa" display_in_upload="true" description="FastqSolexa is the Illumina (Solexa) variant of the Fastq format, which stores sequences and quality scores in a single file." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#FastqSolexa" sniff_compressed_types="True"><converter file="fastq_to_fqtoc.xml" target_datatype="fqtoc"/></datatype><datatype extension="fastqcssanger" auto_compressed_types="gz,bz2" type="galaxy.datatypes.sequence:FastqCSSanger" display_in_upload="true" sniff_compressed_types="True"><converter file="fastq_to_fqtoc.xml" target_datatype="fqtoc"/></datatype><datatype extension="fastqillumina" auto_compressed_types="gz,bz2" type="galaxy.datatypes.sequence:FastqIllumina" display_in_upload="true" sniff_compressed_types="True"><converter file="fastq_to_fqtoc.xml" target_datatype="fqtoc"/></datatype><datatype extension="fqtoc" type="galaxy.datatypes.sequence:SequenceSplitLocations" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="eland" type="galaxy.datatypes.tabular:Eland" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="elandmulti" type="galaxy.datatypes.tabular:ElandMulti" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="genetrack" type="galaxy.datatypes.tracks:GeneTrack" sniff_compressed_types="True"></datatype><datatype extension="gff" type="galaxy.datatypes.interval:Gff" display_in_upload="true" description="GFF lines have nine required fields that must be tab-separated." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#GFF" sniff_compressed_types="True"><converter file="gff_to_bed_converter.xml" target_datatype="bed"/><converter file="gff_to_interval_index_converter.xml" target_datatype="interval_index"/><converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/><converter file="gff_to_fli_converter.xml" target_datatype="fli"/><converter file="gff_to_bgzip_converter.xml" target_datatype="bgzip"/><display file="ensembl/ensembl_gff.xml" inherit="true"/><display file="igv/gff.xml" inherit="true"/></datatype><datatype extension="gff3" auto_compressed_types="gz,bz2" type="galaxy.datatypes.interval:Gff3" display_in_upload="true" description="The GFF3 format addresses the most common extensions to GFF, while preserving backward compatibility with previous formats." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#GFF3" sniff_compressed_types="True"/><datatype extension="gif" type="galaxy.datatypes.images:Gif" mimetype="image/gif" sniff_compressed_types="True"/><datatype extension="gmaj.zip" type="galaxy.datatypes.images:Gmaj" mimetype="application/zip" sniff_compressed_types="True"/><datatype extension="graph_dot" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="gtf" type="galaxy.datatypes.interval:Gtf" display_in_upload="true" sniff_compressed_types="True"><converter file="gff_to_interval_index_converter.xml" target_datatype="interval_index"/><converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/><display file="igb/gtf.xml"/></datatype><datatype extension="toolshed.gz" type="galaxy.datatypes.binary:Binary" mimetype="multipart/x-gzip" subclass="true" sniff_compressed_types="True"/><datatype extension="h5" type="galaxy.datatypes.binary:H5" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="loom" type="galaxy.datatypes.binary:Loom" description="An HDF5-based Loom File" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="h5ad" type="galaxy.datatypes.binary:Anndata" description="An HDF5-based anndata File" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mz5" type="galaxy.datatypes.binary:H5" subclass="true" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="hyphy_results.json" type="galaxy.datatypes.text:Json" mimetype="application/json" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="hivtrace" type="galaxy.datatypes.text:Json" mimetype="application/json" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="cool" type="galaxy.datatypes.binary:Cool" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mcool" type="galaxy.datatypes.binary:MCool" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="html" type="galaxy.datatypes.text:Html" mimetype="text/html" sniff_compressed_types="True"/><datatype extension="interval" type="galaxy.datatypes.interval:Interval" display_in_upload="true" description="File must start with definition line in the following format (columns may be in any order)." sniff_compressed_types="True"><converter file="interval_to_bed_converter.xml" target_datatype="bed"/><converter file="interval_to_bedstrict_converter.xml" target_datatype="bedstrict"/><converter file="interval_to_bed6_converter.xml" target_datatype="bed6"/><converter file="interval_to_bed12_converter.xml" target_datatype="bed12"/><converter file="interval_to_bgzip_converter.xml" target_datatype="bgzip"/><converter file="interval_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/><converter file="interval_to_bigwig_converter.xml" target_datatype="bigwig"/><display file="ensembl/ensembl_interval_as_bed.xml" inherit="true"/><display file="gbrowse/gbrowse_interval_as_bed.xml" inherit="true"/><display file="rviewer/bed.xml" inherit="true"/><display file="igv/interval_as_bed.xml" inherit="true"/></datatype><datatype extension="isa-tab" type="galaxy.datatypes.isa:IsaTab" mimetype="application/isa-tools" display_in_upload="true" description="ISA-Tab data type." description_url="https://isa-tools.org" sniff_compressed_types="True"/><datatype extension="isa-json" type="galaxy.datatypes.isa:IsaJson" mimetype="application/isa-tools" display_in_upload="true" description="ISA-JSON data type." description_url="https://isa-tools.org" sniff_compressed_types="True"/><datatype extension="picard_interval_list" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true" sniff_compressed_types="True"><converter file="picard_interval_list_to_bed6_converter.xml" target_datatype="bed6"/></datatype><datatype extension="gatk_interval" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gatk_report" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gatk_dbsnp" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gatk_tranche" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gatk_recal" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="jpg" type="galaxy.datatypes.images:Jpg" mimetype="image/jpeg" sniff_compressed_types="True"/><datatype extension="tiff" type="galaxy.datatypes.images:Tiff" mimetype="image/tiff" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="tf2" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="tf8" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="btf" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="tif" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="svs" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="scn" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="bif" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="vms" type="galaxy.datatypes.images:Hamamatsu" mimetype="image/hamamatsu" sniff_compressed_types="True"/><datatype extension="vmu" type="galaxy.datatypes.images:Hamamatsu" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="ndpi" type="galaxy.datatypes.images:Hamamatsu" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="mrxs" type="galaxy.datatypes.images:Mirax" mimetype="image/mirax" sniff_compressed_types="True"/><datatype extension="svslide" type="galaxy.datatypes.images:Sakura" mimetype="image/sakura" sniff_compressed_types="True"/><datatype extension="bmp" type="galaxy.datatypes.images:Bmp" mimetype="image/bmp" sniff_compressed_types="True"/><datatype extension="im" type="galaxy.datatypes.images:Im" mimetype="image/im" sniff_compressed_types="True"/><datatype extension="pcd" type="galaxy.datatypes.images:Pcd" mimetype="image/pcd" sniff_compressed_types="True"/><datatype extension="pcx" type="galaxy.datatypes.images:Pcx" mimetype="image/pcx" sniff_compressed_types="True"/><datatype extension="ppm" type="galaxy.datatypes.images:Ppm" mimetype="image/ppm" sniff_compressed_types="True"/><datatype extension="psd" type="galaxy.datatypes.images:Psd" mimetype="image/psd" sniff_compressed_types="True"/><datatype extension="xbm" type="galaxy.datatypes.images:Xbm" mimetype="image/xbm" sniff_compressed_types="True"/><datatype extension="xpm" type="galaxy.datatypes.images:Xpm" mimetype="image/xpm" sniff_compressed_types="True"/><datatype extension="rgb" type="galaxy.datatypes.images:Rgb" mimetype="image/rgb" sniff_compressed_types="True"/><datatype extension="pbm" type="galaxy.datatypes.images:Pbm" mimetype="image/pbm" sniff_compressed_types="True"/><datatype extension="pgm" type="galaxy.datatypes.images:Pgm" mimetype="image/pgm" sniff_compressed_types="True"/><datatype extension="nrrd" type="galaxy.datatypes.images:Nrrd" mimetype="image/nrrd" sniff_compressed_types="True"/><datatype extension="nhdr" type="galaxy.datatypes.images:Nrrd" subclass="true" sniff_compressed_types="True"/><datatype extension="rna_eps" type="galaxy.datatypes.sequence:RNADotPlotMatrix" mimetype="image/eps" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="zip" type="galaxy.datatypes.binary:CompressedZipArchive" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="tar" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true" sniff_compressed_types="True"><converter file="tar_to_directory.xml" target_datatype="directory"/></datatype><datatype extension="directory" type="galaxy.datatypes.data:Directory" sniff_compressed_types="True"></datatype><datatype extension="mrm" type="galaxy.datatypes.tabular:Tabular" display_in_upload="true" subclass="true" sniff_compressed_types="True"/><datatype extension="dta" type="galaxy.datatypes.proteomics:Dta" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="dta2d" type="galaxy.datatypes.proteomics:Dta2d" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="edta" type="galaxy.datatypes.proteomics:Edta" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="raw_pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" subclass="true" sniff_compressed_types="True"/><datatype extension="peptideprophet_pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" subclass="true" sniff_compressed_types="True"/><datatype extension="interprophet_pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" subclass="true" sniff_compressed_types="True"/><datatype extension="protxml" type="galaxy.datatypes.proteomics:ProtXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="paramxml" type="galaxy.datatypes.proteomics:ParamXml" mimetype="application/xml" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="qcml" type="galaxy.datatypes.xml:GenericXml" mimetype="application/xml" subclass="true" display_in_upload="true" description="Quality control data in XML format (https://code.google.com/p/qcml/)." sniff_compressed_types="True"/><datatype extension="kroenik" type="galaxy.datatypes.proteomics:Kroenik" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="peplist" type="galaxy.datatypes.proteomics:PepList" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="psms" type="galaxy.datatypes.proteomics:PSMS" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="pepxml.tsv" type="galaxy.datatypes.proteomics:PepXmlReport" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="protxml.tsv" type="galaxy.datatypes.proteomics:ProtXmlReport" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mascotdat" type="galaxy.datatypes.proteomics:MascotDat" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="mzid" type="galaxy.datatypes.proteomics:MzIdentML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="idxml" type="galaxy.datatypes.proteomics:IdXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="tandem" type="galaxy.datatypes.proteomics:TandemXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="sirius.ms" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="thermo.raw" type="galaxy.datatypes.proteomics:ThermoRAW" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="brukerbaf.d.tar" type="galaxy.datatypes.binary:BafTar" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="agilentbrukeryep.d.tar" type="galaxy.datatypes.binary:YepTar" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="brukertdf.d.tar" type="galaxy.datatypes.binary:TdfTar" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="agilentmasshunter.d.tar" type="galaxy.datatypes.binary:MassHunterTar" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="watersmasslynx.raw.tar" type="galaxy.datatypes.binary:MassLynxTar" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="wiff.tar" type="galaxy.datatypes.binary:WiffTar" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mascotxml" type="galaxy.datatypes.proteomics:MascotXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mztab" type="galaxy.datatypes.proteomics:MzTab" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mztab2" type="galaxy.datatypes.proteomics:MzTab2" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mzml" type="galaxy.datatypes.proteomics:MzML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="nmrml" type="galaxy.datatypes.proteomics:NmrML" mimetype="application/xml" display_in_upload="true" description="nmrML is an open mark-up language for NMR data." description_url="http://nmrml.org/schema/" sniff_compressed_types="True"/><datatype extension="mgf" type="galaxy.datatypes.proteomics:Mgf" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="wiff" type="galaxy.datatypes.proteomics:Wiff" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mzxml" type="galaxy.datatypes.proteomics:MzXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mzdata" type="galaxy.datatypes.proteomics:MzData" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="ms2" type="galaxy.datatypes.proteomics:Ms2" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mzq" type="galaxy.datatypes.proteomics:MzQuantML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="sqlite" type="galaxy.datatypes.binary:SQlite" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mz.sqlite" type="galaxy.datatypes.binary:MzSQlite" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="osw" type="galaxy.datatypes.binary:OSW" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="pqp" type="galaxy.datatypes.binary:PQP" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="traml" type="galaxy.datatypes.proteomics:TraML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="trafoxml" type="galaxy.datatypes.proteomics:TrafoXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="featurexml" type="galaxy.datatypes.proteomics:FeatureXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="consensusxml" type="galaxy.datatypes.proteomics:ConsensusXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="uniprotxml" type="galaxy.datatypes.proteomics:UniProtXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="xquest.xml" type="galaxy.datatypes.proteomics:XquestXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="spec.xml" type="galaxy.datatypes.proteomics:XquestSpecXML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="qcml" type="galaxy.datatypes.proteomics:QCML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="msp" type="galaxy.datatypes.proteomics:Msp" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="splib_noindex" type="galaxy.datatypes.proteomics:SPLibNoIndex" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="splib" type="galaxy.datatypes.proteomics:SPLib" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="blib" type="galaxy.datatypes.binary:BlibSQlite" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="dlib" type="galaxy.datatypes.binary:DlibSQlite" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="elib" type="galaxy.datatypes.binary:ElibSQlite" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="hlf" type="galaxy.datatypes.proteomics:XHunterAslFormat" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="idpdb" type="galaxy.datatypes.binary:IdpDB" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="sf3" type="galaxy.datatypes.proteomics:Sf3" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="cps" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="ct" type="galaxy.datatypes.tabular:ConnectivityTable" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="postgresql" type="galaxy.datatypes.binary:PostgresqlArchive" display_in_upload="True" sniff_compressed_types="True"/><datatype extension="searchgui_archive" type="galaxy.datatypes.binary:SearchGuiArchive" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="fast5.tar" type="galaxy.datatypes.binary:Fast5Archive" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="fast5.tar.gz" type="galaxy.datatypes.binary:Fast5ArchiveGz" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="fast5.tar.bz2" type="galaxy.datatypes.binary:Fast5ArchiveBz2" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="peptideshaker_archive" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="percin" type="galaxy.datatypes.tabular:Tabular" subclass="true" sniff_compressed_types="True"/><datatype extension="percout" type="galaxy.datatypes.xml:GenericXml" subclass="true" sniff_compressed_types="True"/><datatype extension="hardklor" type="galaxy.datatypes.tabular:Tabular" subclass="true" sniff_compressed_types="True"/><datatype extension="kronik" type="galaxy.datatypes.tabular:Tabular" subclass="true" sniff_compressed_types="True"/><datatype extension="imzml" type="galaxy.datatypes.proteomics:ImzML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="analyze75" type="galaxy.datatypes.proteomics:Analyze75" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="peff" type="galaxy.datatypes.proteomics:PEFF" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="deeptools_compute_matrix_archive" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="deeptools_coverage_matrix" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="netcdf" type="galaxy.datatypes.binary:NetCDF" mimetype="application/octet-stream" display_in_upload="true" description="Format used by netCDF software library for writing and reading chromatography-MS data files." sniff_compressed_types="True"/><datatype extension="eps" type="galaxy.datatypes.images:Eps" mimetype="image/eps" sniff_compressed_types="True"/><datatype extension="rast" type="galaxy.datatypes.images:Rast" mimetype="image/rast" sniff_compressed_types="True"/><datatype extension="laj" type="galaxy.datatypes.images:Laj" sniff_compressed_types="True"/><datatype extension="lav" type="galaxy.datatypes.sequence:Lav" display_in_upload="true" description="Lav is the primary output format for BLASTZ.  The first line of a .lav file begins with #:lav.." sniff_compressed_types="True"/><datatype extension="maf" type="galaxy.datatypes.sequence:Maf" display_in_upload="true" description="TBA and multiz multiple alignment format.  The first line of a .maf file begins with ##maf. This word is followed by white-space-separated 'variable=value' pairs. There should be no white space surrounding the '='." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#MAF" sniff_compressed_types="True"><converter file="maf_to_fasta_converter.xml" target_datatype="fasta"/><converter file="maf_to_interval_converter.xml" target_datatype="interval"/></datatype><datatype extension="mafcustomtrack" type="galaxy.datatypes.sequence:MafCustomTrack" sniff_compressed_types="True"><display file="ucsc/maf_customtrack.xml"/></datatype><datatype extension="mtx" type="galaxy.datatypes.tabular:MatrixMarket" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="encodepeak" type="galaxy.datatypes.interval:ENCODEPeak" display_in_upload="true" sniff_compressed_types="True"><converter file="encodepeak_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/><converter file="encodepeak_to_bgzip_converter.xml" target_datatype="bgzip"/><converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/></datatype><datatype extension="pdf" type="galaxy.datatypes.images:Pdf" mimetype="application/pdf" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="pileup" type="galaxy.datatypes.tabular:Pileup" display_in_upload="true" sniff_compressed_types="True"><converter file="interval_to_bgzip_converter.xml" target_datatype="bgzip"/><converter file="interval_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/></datatype><datatype extension="obo" type="galaxy.datatypes.text:Obo" mimetype="text/html" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="owl" type="galaxy.datatypes.xml:Owl" mimetype="text/html" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="png" type="galaxy.datatypes.images:Png" mimetype="image/png" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="qual" type="galaxy.datatypes.qualityscore:QualityScore" sniff_compressed_types="True"/><datatype extension="qualsolexa" type="galaxy.datatypes.qualityscore:QualityScoreSolexa" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="qualillumina" type="galaxy.datatypes.qualityscore:QualityScoreIllumina" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="qualsolid" type="galaxy.datatypes.qualityscore:QualityScoreSOLiD" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="qual454" type="galaxy.datatypes.qualityscore:QualityScore454" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="roadmaps" type="galaxy.datatypes.assembly:Roadmaps" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="sam" type="galaxy.datatypes.tabular:Sam" display_in_upload="true" sniff_compressed_types="True"><converter file="sam_to_unsorted_bam.xml" target_datatype="unsorted.bam"/><converter file="to_coordinate_sorted_bam.xml" target_datatype="bam"/><converter file="to_qname_sorted_bam.xml" target_datatype="qname_sorted.bam"/><converter file="sam_to_bigwig_converter.xml" target_datatype="bigwig"/></datatype><datatype extension="scf" type="galaxy.datatypes.binary:Scf" mimetype="application/octet-stream" display_in_upload="true" description="A binary sequence file in 'scf' format with a '.scf' file extension.  You must manually select this 'File Format' when uploading the file." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Scf" sniff_compressed_types="True"/><datatype extension="sequences" type="galaxy.datatypes.assembly:Sequences" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="shp" type="galaxy.datatypes.gis:Shapefile" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="snpeffdb" type="galaxy.datatypes.text:SnpEffDb" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="snpsiftdbnsfp" type="galaxy.datatypes.text:SnpSiftDbNSFP" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="dbnsfp.tabular" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true" sniff_compressed_types="True"><converter file="tabular_to_dbnsfp.xml" target_datatype="snpsiftdbnsfp"/></datatype><datatype extension="sff" type="galaxy.datatypes.binary:Sff" mimetype="application/octet-stream" display_in_upload="true" description="A binary file in 'Standard Flowgram Format' with a '.sff' file extension." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Sff" sniff_compressed_types="True"/><datatype extension="sra" type="galaxy.datatypes.binary:Sra" mimetype="application/octet-stream" display_in_upload="true" description="A binary file archive format from the NCBI Sequence Read Archive with a '.sra' file extension." description_url="http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Overview_BK/#SRA_Overview_BK.4_SRA_Data_Structure" sniff_compressed_types="True"/><datatype extension="sra_manifest.tabular" type="galaxy.datatypes.tabular:SraManifest" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="svg" type="galaxy.datatypes.xml:GenericXml" mimetype="image/svg+xml" subclass="true" sniff_compressed_types="True"/><datatype extension="taxonomy" type="galaxy.datatypes.tabular:Taxonomy" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="tabular" type="galaxy.datatypes.tabular:Tabular" auto_compressed_types="gz" display_in_upload="true" description="Any data in tab delimited format (tabular)." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Tabular_.28tab_delimited.29" sniff_compressed_types="True"><converter file="tabular_to_csv.xml" target_datatype="csv"/></datatype><datatype extension="twobit" type="galaxy.datatypes.binary:TwoBit" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="sqmass" type="galaxy.datatypes.binary:SQmass" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gemini.sqlite" type="galaxy.datatypes.binary:GeminiSQLite" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="chira.sqlite" type="galaxy.datatypes.binary:ChiraSQLite" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="cuffdiff.sqlite" type="galaxy.datatypes.binary:CuffDiffSQlite" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gafa.sqlite" type="galaxy.datatypes.binary:GAFASQLite" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="ncbitaxonomy.sqlite" type="galaxy.datatypes.binary:NcbiTaxonomySQlite" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="txt" type="galaxy.datatypes.data:Text" display_in_upload="true" description="Any text file." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Plain_text" sniff_compressed_types="True"/><datatype extension="linecount" type="galaxy.datatypes.data:LineCount" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="memepsp" type="galaxy.datatypes.sequence:MemePsp" display_in_upload="true" description="The MEME Position Specific Priors (PSP) format includes the name of the sequence for which a prior distribution corresponds." description_url="http://meme-suite.org/doc/psp-format.html" sniff_compressed_types="True"/><datatype extension="memexml" type="galaxy.datatypes.xml:MEMEXml" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="cisml" type="galaxy.datatypes.xml:CisML" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="xml" type="galaxy.datatypes.xml:GenericXml" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="vcf" type="galaxy.datatypes.tabular:Vcf" display_in_upload="true" sniff_compressed_types="True"><converter file="vcf_to_bgzip_converter.xml" target_datatype="bgzip"/><converter file="vcf_to_vcf_bgzip_converter.xml" target_datatype="vcf_bgzip"/><converter file="vcf_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/><converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/><display file="ucsc/vcf.xml"/><display file="igv/vcf.xml"/><display file="rviewer/vcf.xml" inherit="true"/><display file="iobio/vcf.xml"/></datatype><datatype extension="bcf" type="galaxy.datatypes.binary:Bcf" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"><converter file="bcf_to_bcf_uncompressed_converter.xml" target_datatype="bcf_uncompressed"/></datatype><datatype extension="bcf_bgzip" type="galaxy.datatypes.binary:Bcf" subclass="true" sniff_compressed_types="True"/><datatype extension="bcf_uncompressed" type="galaxy.datatypes.binary:BcfUncompressed" mimetype="application/octet-stream" sniff_compressed_types="True"><converter file="bcf_uncompressed_to_bcf_converter.xml" target_datatype="bcf"/></datatype><datatype extension="velvet" type="galaxy.datatypes.assembly:Velvet" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="wig" type="galaxy.datatypes.interval:Wiggle" display_in_upload="true" description="The wiggle format is line-oriented.  Wiggle data is preceded by a track definition line, which adds a number of options for controlling the default display of this track." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Wig" sniff_compressed_types="True"><converter file="wig_to_bigwig_converter.xml" target_datatype="bigwig"/><converter file="wiggle_to_simple_converter.xml" target_datatype="interval"/><display file="igb/wig.xml"/></datatype><datatype extension="interval_index" type="galaxy.datatypes.binary:Binary" subclass="true" sniff_compressed_types="True"/><datatype extension="odgi" type="galaxy.datatypes.binary:Binary" subclass="true" description="Genomic variation graphs self index used by odgi." display_in_upload="true" sniff_compressed_types="True"/><datatype extension="vg" type="galaxy.datatypes.binary:Binary" subclass="true" description="Genomic variation graphs." display_in_upload="true" sniff_compressed_types="True"/><datatype extension="xg" type="galaxy.datatypes.binary:Binary" subclass="true" description="Genomic variation graphs with vg index." display_in_upload="true" sniff_compressed_types="True"/><datatype extension="protobuf2" type="galaxy.datatypes.binary:Binary" subclass="true" description="Protocol Buffers (Protobuf) is data format for serializing structured data." sniff_compressed_types="True"/><datatype extension="protobuf3" type="galaxy.datatypes.binary:Binary" subclass="true" description="Protocol Buffers (Protobuf) is data format for serializing structured data." sniff_compressed_types="True"/><datatype extension="tabix" type="galaxy.datatypes.binary:Binary" subclass="true" sniff_compressed_types="True"/><datatype extension="bgzip" type="galaxy.datatypes.binary:Binary" subclass="true" sniff_compressed_types="True"/><datatype extension="vcf_bgzip" type="galaxy.datatypes.tabular:VcfGz" display_in_upload="true" sniff_compressed_types="True"><display file="igv/vcf.xml"/><converter file="vcf_bgzip_to_tabix_converter.xml" target_datatype="tabix"/><converter file="gz_to_uncompressed.xml" target_datatype="vcf"/></datatype><datatype extension="bus" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="kallisto.idx" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="phyloxml" type="galaxy.datatypes.xml:Phyloxml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="newick" type="galaxy.datatypes.data:Newick" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="nhx" type="galaxy.datatypes.data:Newick" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="nex" type="galaxy.datatypes.data:Nexus" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="iqtree" type="galaxy.datatypes.text:IQTree" sniff_compressed_types="True"/><datatype extension="mldist" type="galaxy.datatypes.mothur:SquareDistanceMatrix" sniff_compressed_types="True"/><datatype extension="affybatch" type="galaxy.datatypes.genetics:Affybatch" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="eigenstratgeno" type="galaxy.datatypes.genetics:Eigenstratgeno" sniff_compressed_types="True"/><datatype extension="eigenstratpca" type="galaxy.datatypes.genetics:Eigenstratpca" sniff_compressed_types="True"/><datatype extension="eset" type="galaxy.datatypes.genetics:Eset" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="fped" type="galaxy.datatypes.genetics:Fped" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="fphe" type="galaxy.datatypes.genetics:Fphe" display_in_upload="true" mimetype="text/html" sniff_compressed_types="True"/><datatype extension="gg" type="galaxy.datatypes.genetics:GenomeGraphs" sniff_compressed_types="True"/><datatype extension="ldindep" type="galaxy.datatypes.genetics:ldIndep" display_in_upload="true" sniff_compressed_types="True"></datatype><datatype extension="malist" type="galaxy.datatypes.genetics:MAlist" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="lped" type="galaxy.datatypes.genetics:Lped" display_in_upload="true" sniff_compressed_types="True"><converter file="lped_to_fped_converter.xml" target_datatype="fped"/><converter file="lped_to_pbed_converter.xml" target_datatype="pbed"/></datatype><datatype extension="pbed" type="galaxy.datatypes.genetics:Pbed" display_in_upload="true" sniff_compressed_types="True"><converter file="pbed_to_lped_converter.xml" target_datatype="lped"/><converter file="pbed_ldreduced_converter.xml" target_datatype="ldindep"/></datatype><datatype extension="pheno" type="galaxy.datatypes.genetics:Pheno" sniff_compressed_types="True"/><datatype extension="pphe" type="galaxy.datatypes.genetics:Pphe" display_in_upload="true" mimetype="text/html" sniff_compressed_types="True"/><datatype extension="rexpbase" type="galaxy.datatypes.genetics:RexpBase" sniff_compressed_types="True"/><datatype extension="rgenetics" type="galaxy.datatypes.genetics:Rgenetics" sniff_compressed_types="True"/><datatype extension="snptest" type="galaxy.datatypes.genetics:Snptest" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="snpmatrix" type="galaxy.datatypes.genetics:SNPMatrix" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="xls" type="galaxy.datatypes.binary:ExcelXls" sniff_compressed_types="True"/><datatype extension="ipynb" type="galaxy.datatypes.text:Ipynb" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="json" type="galaxy.datatypes.text:Json" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="expression.json" type="galaxy.datatypes.text:ExpressionJson" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="xgmml" type="galaxy.datatypes.graph:Xgmml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="sif" type="galaxy.datatypes.graph:Sif" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="triples" type="galaxy.datatypes.triples:Triples" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="hdt" type="galaxy.datatypes.triples:HDT" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="nt" type="galaxy.datatypes.triples:NTriples" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="n3" type="galaxy.datatypes.triples:N3" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="ttl" type="galaxy.datatypes.triples:Turtle" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdf" type="galaxy.datatypes.triples:Rdf" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="jsonld" type="galaxy.datatypes.triples:Jsonld" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="excel.xls" type="galaxy.datatypes.binary:ExcelXls" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="xlsx" type="galaxy.datatypes.binary:Xlsx" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="btwisted" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="cai" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="cat_db" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="charge" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="checktrans" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="chips" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="codcmp" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="coderet" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="compseq" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="cpgplot" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="cpgreport" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="cusp" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="cut" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="dan" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="digest" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="dreg" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="einverted" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="epestfind" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="equicktandem" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="est2genome" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="etandem" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="freak" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="fuzznuc" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="fuzzpro" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="fuzztran" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="garnier" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="geecee" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="helixturnhelix" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="hmoment" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="isochore" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="match" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="nametable" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="needle" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="newcpgreport" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="newcpgseek" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="noreturn" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="palindrome" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="pepcoil" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="pepinfo" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="pepstats" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="polydot" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="preg" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="prettyseq" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="primersearch" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="showfeat" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="showorf" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="sixpack" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="strider" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="supermatcher" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="syco" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="textsearch" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="vectorstrip" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="wobble" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="wordcount" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="dbmotif" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="diffseq" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="excel" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="feattable" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="motif" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="regions" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="seqtable" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="simple" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="table" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="tagseq" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="acedb" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="clustal" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="codata" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="embl" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="fitch" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="gcg" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="genbank" auto_compressed_types="gz" sniff_compressed_types="true" type="galaxy.datatypes.sequence:Genbank" display_in_upload="True"><display file="igv/genbank.xml"/></datatype><datatype extension="hennig86" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="ig" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="jackknifer" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="jackknifernon" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="mega" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="meganon" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="ncbi" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="nexus" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="nexusnon" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="phylip" type="galaxy.datatypes.phylip:Phylip" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="phylipnon" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="pir" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="staden" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="swiss" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="markx0" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="markx1" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="markx10" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="markx2" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="markx3" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="pair" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="score" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="srs" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="srspair" type="galaxy.datatypes.data:Text" subclass="true" sniff_compressed_types="True"/><datatype extension="snaphmm" type="galaxy.datatypes.annotation:SnapHmm" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="augustus" type="galaxy.datatypes.annotation:Augustus" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="icm" type="galaxy.datatypes.binary:ICM" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="cm" type="galaxy.datatypes.msa:InfernalCM" display_in_upload="False" sniff_compressed_types="True"/><datatype extension="hmm2" type="galaxy.datatypes.msa:Hmmer2" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="hmm3" type="galaxy.datatypes.msa:Hmmer3" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="stockholm" type="galaxy.datatypes.msa:Stockholm_1_0" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="xmfa" type="galaxy.datatypes.msa:MauveXmfa" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="cel" type="galaxy.datatypes.microarrays:Cel" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gpr" type="galaxy.datatypes.microarrays:Gpr" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gal" type="galaxy.datatypes.microarrays:Gal" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdata" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" display_in_upload="true" description="Stored data from an R session" sniff_compressed_types="True"/><datatype extension="rdata.sce" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" description="Stored RDS from a SingleCellObject" sniff_compressed_types="True"/><datatype extension="rdata.xcms.raw" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdata.msnbase.raw" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdata.xcms.findchrompeaks" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdata.xcms.group" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdata.xcms.retcor" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdata.xcms.fillpeaks" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdata.camera.positive" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdata.camera.negative" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdata.camera.quick" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="rdock_as" type="galaxy.datatypes.binary:Binary" description="rDock active site format" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="oxlicg" type="galaxy.datatypes.binary:OxliCountGraph" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="oxling" type="galaxy.datatypes.binary:OxliNodeGraph" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="oxlits" type="galaxy.datatypes.binary:OxliTagSet" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="oxlist" type="galaxy.datatypes.binary:OxliStopTags" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="oxliss" type="galaxy.datatypes.binary:OxliSubset" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="oxligl" type="galaxy.datatypes.binary:OxliGraphLabels" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="stl" type="galaxy.datatypes.constructive_solid_geometry:STL" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="plyascii" type="galaxy.datatypes.constructive_solid_geometry:PlyAscii" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="plybinary" type="galaxy.datatypes.constructive_solid_geometry:PlyBinary" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="vtkascii" type="galaxy.datatypes.constructive_solid_geometry:VtkAscii" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="vtkbinary" type="galaxy.datatypes.constructive_solid_geometry:VtkBinary" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="biom1" type="galaxy.datatypes.text:Biom1" display_in_upload="true" mimetype="application/json" sniff_compressed_types="True"><display file="biom/biom_simple.xml"/><converter file="biom1_to_biom2.xml" target_datatype="biom2"/></datatype><datatype extension="biom2" type="galaxy.datatypes.binary:Biom2" mimetype="application/octet-stream" display_in_upload="true" sniff_compressed_types="True"><converter file="biom2_to_biom1.xml" target_datatype="biom1"/></datatype><datatype extension="msh" type="galaxy.datatypes.binary:MashSketch" display_in_upload="True" sniff_compressed_types="True"/><datatype extension="scidx" type="galaxy.datatypes.interval:ScIdx" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="smi" type="galaxy.datatypes.molecules:SMILES" display_in_upload="true" sniff_compressed_types="True"><converter file="smi_to_sdf_converter.xml" target_datatype="sdf"/><converter file="smi_to_inchi_converter.xml" target_datatype="inchi"/><converter file="smi_to_cml_converter.xml" target_datatype="cml"/><converter file="smi_to_mol_converter.xml" target_datatype="mol"/><converter file="smi_to_mol2_converter.xml" target_datatype="mol2"/><converter file="smi_to_smi_converter.xml" target_datatype="smi"/></datatype><datatype extension="sdf" type="galaxy.datatypes.molecules:SDF" display_in_upload="true" sniff_compressed_types="True"><converter file="sdf_to_smi_converter.xml" target_datatype="smi"/><converter file="sdf_to_inchi_converter.xml" target_datatype="inchi"/><converter file="sdf_to_mol2_converter.xml" target_datatype="mol2"/><converter file="sdf_to_cml_converter.xml" target_datatype="cml"/><display file="icn3d/icn3d_simple.xml"/></datatype><datatype extension="inchi" type="galaxy.datatypes.molecules:InChI" display_in_upload="true" sniff_compressed_types="True"><converter file="inchi_to_smi_converter.xml" target_datatype="smi"/><converter file="inchi_to_sdf_converter.xml" target_datatype="sdf"/><converter file="inchi_to_mol_converter.xml" target_datatype="mol"/><converter file="inchi_to_mol2_converter.xml" target_datatype="mol2"/><converter file="inchi_to_cml_converter.xml" target_datatype="cml"/></datatype><datatype extension="mol" type="galaxy.datatypes.molecules:MOL" display_in_upload="true" sniff_compressed_types="True"><converter file="mol_to_smi_converter.xml" target_datatype="smi"/><converter file="mol_to_inchi_converter.xml" target_datatype="inchi"/><converter file="mol_to_mol2_converter.xml" target_datatype="mol2"/><converter file="mol_to_cml_converter.xml" target_datatype="cml"/></datatype><datatype extension="mol2" type="galaxy.datatypes.molecules:MOL2" display_in_upload="true" sniff_compressed_types="True"><converter file="mol2_to_smi_converter.xml" target_datatype="smi"/><converter file="mol2_to_sdf_converter.xml" target_datatype="sdf"/><converter file="mol2_to_inchi_converter.xml" target_datatype="inchi"/><converter file="mol2_to_mol_converter.xml" target_datatype="mol"/><converter file="mol2_to_cml_converter.xml" target_datatype="cml"/><display file="icn3d/icn3d_simple.xml"/></datatype><datatype extension="cml" type="galaxy.datatypes.molecules:CML" display_in_upload="true" sniff_compressed_types="True"><converter file="cml_to_smi_converter.xml" target_datatype="smi"/><converter file="cml_to_inchi_converter.xml" target_datatype="inchi"/><converter file="cml_to_sdf_converter.xml" target_datatype="sdf"/><converter file="cml_to_mol2_converter.xml" target_datatype="mol2"/></datatype><datatype extension="fps" type="galaxy.datatypes.molecules:FPS" mimetype="text/html" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="obfs" type="galaxy.datatypes.molecules:OBFS" mimetype="text/html" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="drf" type="galaxy.datatypes.molecules:DRF" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="phar" type="galaxy.datatypes.molecules:PHAR" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="pdb" type="galaxy.datatypes.molecules:PDB" display_in_upload="true" sniff_compressed_types="True"><display file="icn3d/icn3d_simple.xml"/></datatype><datatype extension="pdbqt" type="galaxy.datatypes.molecules:PDBQT" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="pqr" type="galaxy.datatypes.molecules:PQR" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="trr" type="galaxy.datatypes.binary:Trr" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="dcd" type="galaxy.datatypes.binary:Dcd" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="top" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="itp" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mdp" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="ndx" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="xvg" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="xtc" type="galaxy.datatypes.binary:Xtc" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="cpt" type="galaxy.datatypes.binary:Cpt" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="edr" type="galaxy.datatypes.binary:Edr" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="tpr" type="galaxy.datatypes.binary:Binary" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="gro" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="vel" type="galaxy.datatypes.binary:Vel" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="grd" type="galaxy.datatypes.molecules:grd" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="grd.tgz" type="galaxy.datatypes.molecules:grdtgz" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.otu" type="galaxy.datatypes.mothur:Otu" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.list" type="galaxy.datatypes.mothur:Otu" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.sabund" type="galaxy.datatypes.mothur:Sabund" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.rabund" type="galaxy.datatypes.mothur:Sabund" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.shared" type="galaxy.datatypes.mothur:GroupAbund" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.relabund" type="galaxy.datatypes.mothur:GroupAbund" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.names" type="galaxy.datatypes.mothur:Names" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.design" type="galaxy.datatypes.mothur:Group" subclass="true" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.summary" type="galaxy.datatypes.mothur:Summary" 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display_in_upload="true" sniff_compressed_types="True"/><datatype extension="mothur.count_table" type="galaxy.datatypes.mothur:CountTable" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="neostore" type="galaxy.datatypes.neo4j:Neo4jDB" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="neostore.zip" type="galaxy.datatypes.neo4j:Neo4jDBzip" display_in_upload="true" sniff_compressed_types="True"><converter file="neostorezip_to_neostore_converter.xml" target_datatype="neostore"/></datatype><datatype extension="trackhub" type="galaxy.datatypes.tracks:UCSCTrackHub" display_in_upload="true" sniff_compressed_types="True"><display file="ucsc/trackhub.xml"/></datatype><datatype extension="blastxml" type="galaxy.datatypes.blast:BlastXml" mimetype="application/xml" display_in_upload="true" sniff_compressed_types="True"/><datatype extension="blastdbn" type="galaxy.datatypes.blast:BlastNucDb" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="blastdbp" type="galaxy.datatypes.blast:BlastProtDb" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="blastdbd" type="galaxy.datatypes.blast:BlastDomainDb" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="lastdb" type="galaxy.datatypes.blast:LastDb" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="blastdbn5" type="galaxy.datatypes.blast:BlastNucDb5" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="blastdbp5" type="galaxy.datatypes.blast:BlastProtDb5" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="blastdbd5" type="galaxy.datatypes.blast:BlastDomainDb5" mimetype="text/html" display_in_upload="false" sniff_compressed_types="True"/><datatype extension="maskinfo-asn1" 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+            
\ No newline at end of file