annotate batched_lastz.xml @ 1:ad3554614aad draft

planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit fc8b75c4bed19a7d2eb854ac0476f26c81698c15
author richard-burhans
date Tue, 30 Apr 2024 21:48:00 +0000
parents 103538753e81
children 007990f98551
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
1 <tool id="batched_lastz" name="Batched Lastz" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
2 <description>: align batches of sequences</description>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
3 <macros>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
4 <import>macros.xml</import>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
5 </macros>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
6 <expand macro="requirements"/>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
7 <command detect_errors="exit_code"><![CDATA[
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
8 run_lastz_tarball.py '--input=$input' '--output=$output' '--parallel=\${GALAXY_SLOTS:-2}'
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
9 ]]></command>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
10 <inputs>
1
ad3554614aad planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit fc8b75c4bed19a7d2eb854ac0476f26c81698c15
richard-burhans
parents: 0
diff changeset
11 <param argument="--input" type="data" format="tgz" label="Tarball"/>
0
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
12 </inputs>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
13 <outputs>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
14 <data name="output" label="Output"/>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
15 </outputs>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
16 <help><![CDATA[
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
17 TODO: Fill in help.
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
18 ]]></help>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
19 <expand macro="citations"/>
103538753e81 planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff changeset
20 </tool>