Mercurial > repos > richard-burhans > batched_lastz
annotate batched_lastz.xml @ 1:ad3554614aad draft
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit fc8b75c4bed19a7d2eb854ac0476f26c81698c15
author | richard-burhans |
---|---|
date | Tue, 30 Apr 2024 21:48:00 +0000 |
parents | 103538753e81 |
children | 007990f98551 |
rev | line source |
---|---|
0
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
1 <tool id="batched_lastz" name="Batched Lastz" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
2 <description>: align batches of sequences</description> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
3 <macros> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
4 <import>macros.xml</import> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
5 </macros> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
6 <expand macro="requirements"/> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
7 <command detect_errors="exit_code"><![CDATA[ |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
8 run_lastz_tarball.py '--input=$input' '--output=$output' '--parallel=\${GALAXY_SLOTS:-2}' |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
9 ]]></command> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
10 <inputs> |
1
ad3554614aad
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit fc8b75c4bed19a7d2eb854ac0476f26c81698c15
richard-burhans
parents:
0
diff
changeset
|
11 <param argument="--input" type="data" format="tgz" label="Tarball"/> |
0
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
12 </inputs> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
13 <outputs> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
14 <data name="output" label="Output"/> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
15 </outputs> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
16 <help><![CDATA[ |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
17 TODO: Fill in help. |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
18 ]]></help> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
19 <expand macro="citations"/> |
103538753e81
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/batched_lastz commit 7b119b432f721e228a73396d4e8f0d54350b0481
richard-burhans
parents:
diff
changeset
|
20 </tool> |