Mercurial > repos > richard-burhans > ncbi_egapx
comparison test-data/input.yaml @ 3:4420dd857c41 draft
planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_egapx commit 050f870384e004445d3dcfb56302b7894793bd23
| author | richard-burhans |
|---|---|
| date | Mon, 09 Sep 2024 22:07:18 +0000 |
| parents | 0ab743c8837f |
| children | 5bec47dfe99a |
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| 2:7c72d5c7e449 | 3:4420dd857c41 |
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| 1 # | 1 # This is a very minimal example of EGAPx, it fits into 4 CPU cores and 6GB of memory. |
| 2 # To be able to do this, we culled the input files and some stages of execution. | |
| 3 # To limit the requirements you also need to use -e docker_minimal | |
| 4 | |
| 5 genome: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/809/275/GCF_020809275.1_ASM2080927v1/GCF_020809275.1_ASM2080927v1_genomic.fna.gz | |
| 6 reads: | |
| 7 - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572.1 | |
| 8 - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572.2 | |
| 9 - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248.1 | |
| 10 - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248.2 | |
| 11 taxid: 6954 | |
| 12 proteins: [] | |
| 13 hmm: https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/gnomon/hmm_parameters/6956.params | |
| 14 tasks: | |
| 15 star_wnode: | |
| 16 star_wnode: -cpus-per-worker 4 | |
| 17 |