diff test-data/input.yaml @ 3:4420dd857c41 draft

planemo upload for repository https://github.com/richard-burhans/galaxytools/tree/main/tools/ncbi_egapx commit 050f870384e004445d3dcfb56302b7894793bd23

--- a/test-data/input.yaml	Tue Aug 20 19:47:25 2024 +0000
+++ b/test-data/input.yaml	Mon Sep 09 22:07:18 2024 +0000
@@ -1,1 +1,17 @@
-#
+# This is a very minimal example of EGAPx, it fits into 4 CPU cores and 6GB of memory.
+# To be able to do this, we culled the input files and some stages of execution.
+# To limit the requirements you also need to use -e docker_minimal
+
+genome: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/020/809/275/GCF_020809275.1_ASM2080927v1/GCF_020809275.1_ASM2080927v1_genomic.fna.gz
+reads:
+  - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572.1
+  - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR8506572.2
+  - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248.1
+  - https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/sample_data/Dermatophagoides_farinae_small/SRR9005248.2
+taxid: 6954
+proteins: []
+hmm: https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/EGAP/gnomon/hmm_parameters/6956.params
+tasks:
+  star_wnode:
+    star_wnode: -cpus-per-worker 4
+